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Sl.NoTitleYear of Publication
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Sl.NoTitleYear of Publication
15Evolution of the SRGAP2 Gene Is Linked to Intelligence in Mammals., , Biomed Hub S.Karger AG,Basel, 20162016
14 1. A. Kumar, P.L. Thotakura, Basant K Tiwary and Ramadas Krishna , Target identification in Fusobacterium nucleatum by subtractive genomics approach and enrichment analysis of host-pathogen protein-protein interactions, , BMC microbiology, 20162016
13Next-generation sequencing and assembly of plant genomes., , PlantOmics: The Omics of Plant Science. (Editors: Barh D., Khan, M.S., Davies E.), 20152015
12Correlated evolution of Gonadotropin-Releasing Hormone and Gonadotropin-Inhibitory Hormone and their receptors in mammals., , S.Karger AG,Basel, 20132013
11 Vaishnavi V, Manikandan M, Munirajan AK, Insights on the Functional Impact of MicroRNAs Present in Autism-Associated Copy Number Variants, PLoS One, , 20132013
10 S. Datta, S. Sarkar, S. Chakraborty, S. K. Mulpuru, S. Basu, Basant K. Tiwary, N. Chakrabarti & P. K. Roy, MRI characterization of temporal lobe epilepsy using rapidly measurable spatial indices with hemisphere asymmetries and gender features. Neuroradiology, Springer, , 20152015
9 The coordinated expression, interaction and evolution of the neuroendocrine genes, Integrative Biology, , 20122012
8 The severity of mental disorders is linked to interaction among candidate genes, Integrative Biology, , 20122012
7 9. S.B. Paul, Basant K. Tiwary & Arun Paul Choudhury, Studies on the epidemiology of cervical cancer in Southern Assam, , Assam University Journal of Science & Technology , 20112011
6 Basant K. Tiwary, Local molecular clock is not consistent with parallel evolution of androgen binding proteins, , Biotech, 20112011
5 M. A. Siddique, B. K. Tiwary & S.B. Paul, Phospholipid and protein contents of lens proteolipids in human senile cataract., Nature Eye, , 20102010
4 Madhumita Ghosh, Basant K. Tiwary , Maintaining optimal state probabilities in biological systems, Systems and Synthetic Biology(Springer), , 20102010
3 Wen-Hsiung Li, Parallel evolution between aromatase and androgen receptor in the animal kingdom, Molecular Biology & Evolution, , 20092009
2 R. Kirubagaran & Arun K. Ray , Testosterone triggers the brain-pituitary-gonad axis of juvenile female catfish (Heteropneustes fossilis Bloch) for precocious ovarian maturation, Elsevier, , 20022002
1 R. Kirubagaran & Arun K. Ray , Gonadotropin releasing hormone (GnRH) neurones of triploid catfish, Heteropneustes fossilis (Bloch): an immunocytochemical study, Elsevier, , 20022002
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case 19:

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Sl.NOTitleYear of Publication
34 Ampasala, D.R.; Pritika, M.; Coumar, M.S.; Venkatsan, A., Mining plutella xylostellas expressed sequence tags (EST) for a functionally annotated candidate gene index., , Indian Journal of Agricultural Research, 20162016
33 Kotapati Kasi Viswanath, Bhagath Kumar Palaka , Alleviation of nickel toxicity in finger millet (Elusine coracana L) germinating seedlings by exogeenous application of salicylic acid and nitric oxide. , , The Crop, 20162016
32 P, B. K.; K, K. V.; S, T. D.; R, S. K.; Doucet, D.; Retnakaran, A.; Krell, P. J.; Feng, Q.; Ampasala, D. R., , Molecular cloning and structural characterization of Ecdysis Triggering Hormone from Choristoneura fumiferana, , International journal of biological macromolecules, 20162016
31 Surampudi Durga Karteek, I. V. Kasi Viswanath, Mandava V. Basaveswara Rao, Sapam Tuleshwori Devi , Design, synthesis and docking study of novel coumarin based 1,3-oxazine derivatives as probable anti-cancer drugs., , Der Pharma Chemica, 20162016
30 Raveendra Aanangi., Kasi Viswanath Kotapati., Bhagath Kumar Palaka., Thyagaraju Kedam., Nirmala Devi Kanika., Purification and characterization of lipoxygenase from mung bean (Vigna radiata L.) germinating seedlings, , 3 Biotech , 20162016
29 Bhagath Kumar P., Kasi Viswanath K, Tuleswori Devi S, Sampath Kumar R, Daniel Doucet, Arthur Retnakaran, Peter J. Krell, Qili Feng , Molecular Cloning and Strucutural characterization of Ecdysis Triggering Hormone from Choristoneura fumiferana, , International Journal of Biological Macromolecules, 20162016
28 Shaik, J. B.; Palaka, B. K.; Penumala, M.; Eadlapalli, S.; Darla, M. M.;Vadde, R.; Amooru, D. G., Synthesis, biological evaluation and molecular docking of 8-imino-2-oxo-2H,8H-pyrano[2,3-f]chromene analogues: New dual AChE inhibitors as potential drugs for the treatment of Alzheimers disease., , Chemical biology & drug design, 20162016
27 Kasi Viswanath Kotapati, Bhagath Kumar Palaka, AnithammaKandukuri, Ramachandra Reddy Pamuru, Veeranjaneya Reddy Lebaka , Molecular cloning, characterization and three-dimensional structure prediction of Lipoxygenase from Finger millet [Eleusinecoracana (L.) Gaertn.] g erminating seedlings, , Journal of Plant Biochemistry and Biotechnology, 20152015
26 Shaik, J. B.; Palaka, B. K.; Penumala, M.; Kotapati, K. V.; Devineni, S. R.; Eadlapalli, S.; Darla, M. M.; Ampasala, D. R.; Vadde, R.; Amooru, G. D.,, Synthesis, pharmacological assessment, molecular modeling and in silico studies of fused tricyclic coumarin derivatives as a new family of multifunctional anti-Alzheimer agents, European journal of medicinal chemistry, , 20152015
25 Kotapati, K. V.; Palaka, B. K.; Anangi, R.; Kedam, T.; Ampasala, D. R.,, Cloning and characterization of lipoxygenase gene from germinating seedlings of green gram (Vigna radiata L.), Indian Journal of Plant Physiology, , 20152015
24 Devi, S. T.; Tandon, H.; Ampasala, D. R., , Identification of potent bromodomain4 (BRD4) inhibitors by energypharmacophore based virtual screening to target BRD4-NUT midline carcinoma, International Journal of Pharmacy and Pharmaceutical Sciences, , 20152015
23 Sapam Tuleshwori Devi, Anushree Dutta, Bhagath Kumar Palaka, MohdBabu Khan, Kasi Viswanath, Identification and Validation of CCR5 Antagonists from Maraviroc Analogs by PharmacophoreModelling and 3D-QSAR Studies, , Current Drug Therapy, 20152015
22 Manas Ranjan Barik, Insilico identification and analysis of spo0A as drug target in Clostridium difficile., , Journal of Chemical and Pharmaceutical Research , 20152015
21 Kasi Viswanath Kotapati., Bhagath Kumar Palaka., Anithamma Kandukuri., Ramachandra Reddy Pamuru , Response of antioxidative enzymes and lipoxygenase to drought stress in Finger millet leaves (Eleusine coracana (L.) Gaertn). International Journal of Plant, Animal and Environmental Sciences, , International Journal of Plant, Animal and Environmental Sciences. , 20142014
20 Devi, S. T.; Dutta, A.; Palaka, B. K.; Khan, M. B.; Viswanath, K., Identification and validation of CCR5 antagonists from maraviroc analogs by pharmacophore modelling and 3D-QSAR studies, , Current Drug Therapy, 20142014
19 Bhagath Kumar P., NagendraPratap S., KasiViswanath K., Sampath Kumar R, UDP-N-Acetyl glucosamine pyrophosphorylase as novel target for controlling Aedesaegypti molecular modeling, docking and simulation studies, , International Journal of Mosquito Research, 20142014
18 DheerajChitara, K.K. Viswnath, P. Bhagathkumar, Structural Characterization of Human 15-Lipoxygenase Protein, A Key Player in Human Pancreatic Cancer, , Indian Journal of Advances in Chemical Science, 20142014
17 Shiva Kumar.E., Viswanath.K.K, Bhagath.K.P., Vijayalakshmi.D., Dinakara Rao. A., Antimicrobial Effect Of Lipoxygenase Mediated Primary Phyto-Oxylipins from Horse Gram (Dolichos Bifloruse) Germinating Seedlings On Common Microbial Flora., , International Journal of Recent Scientific Research., 20132013
16 Sichun Zheng, Dayu Zhang, Tim Ladd, and Daniel Doucet Peter J. Krell, Arthur Retnakaran and Qili Feng , An epidermis-specific chitin synthase cDNA in Choristoneura fumiferana: Cloning, characterization, developmental and hormonal regulated expression, , Arch Insect Biochemistry and Physiology, 20112011
15 Silke Suer, Dinakar Ampasala Mary F. Walsh, and Basson MD, Role of ERK/mTOR signaling in transforming growth factor B-modulated focal adhesion kinase mRNA stability and protein synthesis in intestinal epithelial cell, , Cell and Tissue Res, 20092009
14 Matthew A. Sanders, Dinakar Ampasala and Marc D. Basson , Dock5 and Dock1 regulate Caco-2 Intestinal epithelial cell spreading and migration on collagen IV, Journal of Biological Chemistry, , 20092009
13 Mary F. Walsh, Dinakar R Ampasala, Arun K. Rishi and Marc D. Basson, TGF-B1 modulates focal adhesion kinase expression in rat intestinal epithelial IEC-6 cells 0via stimulatory and inhibitory Smad binding elements, , BBA Gene Regulatory Mechanisms, 20092009
12 Mary F. Walsh, Dinakar R. Ampasala, James Hatfield, Richard Vander Heide, Silke Suer, Arun K. Rishi and Marc D. Basson, Transfroming growth factor-B stimulates intestinal epithelial focal adhesion kinase synthesis via Samd- and p38 dependent mechanisms., , The American Journal of Pathology, 20082008
11 A. Raveendra, D. R. Ampasala, D. Sandhya and Thyagaraju K., Oral administration of Azadirachta indica (L.) seed kernek active principle protecs rat liver hepatocytes and tetis seminiferous tubules from phenobarbitol induced damage, , Journal of herbal pharmacotherapy, 20082008
10 K.Thyagaraju, A. Raveendra, S.K. Ruxana Begum and A. D. Rao, Characterization of horse gram (Dolichos biflorus) lipoxygeanse, , J. Phytol. Res, 20072007
9 D-Y Zhang, D.R. Ampasala, S-C.Zheng, M.Cusson, X-W. Cheng, P.J.Krell and Q-L. Feng, Molecular Cloning and Characterization of a putative Nuclear DEAD box RNA helicase in the Spruce budworm, Choristoneura fumiferana, , Arch Insect Biochemistry and Physiology, 20062006
8 Thyagaraju K., Hemavathi B., Vasundhrara K., Rao A.D., Devi K.N, Comparative study on glutathione transferase of rat barain and testis under the stress of Phenobarbital and B-methylcholanthene, , Journal of Zhejian University Science. , 20052005
7 D. R. Ampasala, S-C. Zheng, A. Retnakaran, P.J.Krell, B.M.Arif and Q-L. Feng, Cloning and expression of a putative transferrin cDNA of the Spruce budworm Choristroneura fumiferana., Elsevier, , 20042004
6 Wenqi Hu, Barbara J. Cook, Dinakara R. Ampasala, Sichun Zheng, Guido Caputo Peter J.Krell, Arthur Retnakaran, Basil M. Arif and Qili Feng, Morphological and Molecular Effects of 20-Hydroxyecdysone and Its Agonist Tebufenozide on CF-203, a Midgut-Derived Cell Line from the Spruce Budworm, Choristoneura fumiferana, , Arch Insect Biochemistry and Physiology, 20042004
5 A.D. Rao, K. N. Devi and K. Thyagaraju, Induction of Glutathione s transferases in rats by b-methyl cholanthrene, , In proceedings of the national Seminar on recent advances in molecular physiology held on 4-6 Feb, 2002 at the University of Kalyani, 20022002
4 A.D.Rao, K.N.Devi and K.Thyagaraju, Isolation of antioxidant principle from Azadirachta seed kernels: Determination of its role on plant lipoxygenases, , J. Enzyme. Inhibition, 19981998
3 K.N.Devi, A.D.Rao, B. Hemavathi and K.Thyagaraju, Glutathione S- transferases of Bombyx mori L. larvae, , Indian Journal of Sericulture, 19961996
2 K. Nirmala Devi, A. S. Sreedhar, A. Dinakar Rao, K. Padmaja and K. Thyagaraju , Induction of lipid peroxidation in germinating seedlings of Phaseolus vulgaris L. by various pollutants, , Indian J. Plant Physiol.,, 19961996
1 K.Thyagaraju, K.N.Devi, A.D.Rao, M. Balaji, G. R.Hildenbrandt, R.Ramamurthi and C.C.Reddy, Purification and Characterization of 12 forms of rat brain glutathione S - transferases, , Journal of parasitology and applied animal biology, 19961996
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Sl.NoTitleYear of Publication
55Saravanan, V.; Dualpred, A webserver for predicting plant proteins dual-targeted to chloroplast and mitochondria using split protein-relatedness-measure feature, Current Bioinformatics, , 20152015
54Saravanan, V.; Lakshmi, P. T. V, ACPP: A web server for prediction and design of anti-cancer peptides, , International Journal of Peptide Research and Therapeutics, 20152015
53ani, N.; Velan, L. P.; Vijaykumar, S.; Arunachalam, A, An insight into the potentially old-wonder molecule-quercetin: the perspectives in foresee. , , Chinese journal of integrative medicine, 20152015
52Rani, N.; Saravanan, V.; V, L. P.; Arunachalam, A, Allosteric site mediated active site inhibition of PBP2a using Quercetin 3-O-Rutinoside and its combination, , Journal of biomolecular structure & dynamics, 20152015
51Lakshmi, P. T.; Priyanka, D.; Annamalai, A, Reduction of Silver Ions by Cell Free Extracts of Westiellopsis sp., , International journal of biomaterials , 20152015
50Jaiswal, A.; Lakshmi, P. T. V, Molecular inhibition of telomerase recruitment using designer peptides: An in silico approach, , Journal of Biomolecular Structure and Dynamics, 20152015
49Saravanan, V.; Lakshmi, P. T.,, Fuzzy logic for personalized healthcare and diagnostics: FuzzyApp--a fuzzy logic based allergen-protein predictor, Integrative Biology, , 20142014
48Rani, N.; Vijayakumar, S.; Thanga Velan, L. P.; Arunachalam, A., Quercetin 3-O-rutinoside mediated inhibition of PBP2a: computational and experimental evidence to its anti-MRSA activity, , Molecular Biosystems, 20142014
47Ponmari, G.; Annamalai, A.; Gopalakrishnan, V. K.; Lakshmi, P. T. V.; Guruvayoorappan, C, NF-kB activation and proinflammatory cytokines mediated protective effect of Indigofera caerulea Roxb. on CCl4 induced liver damage in rats., , International immunopharmacology, 20142014
46Annamalai, A.; Christina, V. L. P.; Christina, V.; Lakshmi, P. T. V, Green synthesis and characterisation of Ag NPs using aqueous extract of Phyllanthus maderaspatensis L, , Journal of Experimental Nanoscience, 20142014
45Amit Jaiswal and Lakshmi P.T.V, Molecular Inhibition Of Telomerase Recruitment Using Designer Peptides: An In-Silico Approach, , Journal of Biomolecular Structure & Dynamics, 20142014
44Nidhi Rani, Lakshmi PTV, Saravanan V and Annamalai A , An insight in to the potentially old-wonder molecule-Quercetin: the perspective in foresee, , Chinese journal of integrative medicine, 20142014
43Nidhi Rani, V. Saravanan, P. T. V. Lakshmi and A. Annamalai, Inhibition of Pore Formation by Blocking the Assembly of Staphylococcus aureus a-Hemolysin Through a Novel Peptide Inhibitor: an In Silico Approach., Springer, , 20142014
42Saravanan, V.; Lakshmi, P. T. V, FuzzyApp : A fuzzylogic based allergen predictor., Integrative Biology, , 20142014
41Lakshmi P.T.V, Sathya Priya and Annamalai A , Detection and Comparative Analysis of Uber-operons of FabZ gene Responsible for Fatty Acid Biosynthesis in Nostoc Punctiforme Cyanobacterium, , Research & Reviews: A Journal of Bioinformatics, 20142014
40Saravanan, V.; Lakshmi, P. T. V, Dualpred: A Webserver For Predicting Plant Proteins Dual-Targeted To Chloroplast And Mitochondria Using Split Protein-Relatedness-Measure Feature., Current Bioinformatics, , 20142014
39Annamalai, A., V.L.P. Christina, V. Christina and P.T.V. Lakshmi, Green synthesis and characterization of Ag NPs using aqueous extract of Phyllanthus maderaspatensis L, , Journal of Experimental Nanoscience, 20142014
38Lakshmi P.T.V, Pragna Lakshmi T and Annamalai A, Insilico Modelling and Comparative Docking Studies of EWS-FLI1 Responsible for Ewing Sarcoma in Human Beings, , Research & Reviews: A Journal of Bioinformatics, 20142014
37Saravanan, V.; Lakshmi, P. T. V, SCLAP: An Adaptive Boosting Method for Predicting Sub- chloroplast Localization of Plant Proteins, Integrative Biology, , 20132013
36Annamalai, V.L.P. Christina, D. Sudha, Kalpana, P.T.V. Lakshmi, Green synthesis, characterization and antimicrobial activity of Au NPs using Euphorbia hirta L. leaf extract., Elsevier, , 20132013
35S. Borkotoky, V. Saravanan, A. Jaiswal, B. Das, S. Selvaraj, A. Murali and P.T.V.Lakshmi, The Arabidopsis Stress Responsive Gene Database, , International Journal of Plant Genomics, 20132013
34Jayaprakash. C, P.T.V. Lakshmi and Ondari. N. E., Molecular modeling approach and RMSD calibration for superimposed 3D structure of DHFR from Pneumocystis jiroveci, , AmericaN Journal Of PharmaTech Research, 20132013
33Ithayaraja C. M and P.T.V. Lakshmi, Sequence Analysis For Structure And Function Characterization Of Glutathione Reductase From Nostoc Sp., , International Journal of Universal Pharmacy and Bio Sciences , 20132013
32Saravanan, V.; Lakshmi, P. T. V, SLocP Tool Box-An Integrated Platform for Predicting Sub Cellular Localization of Proteins, , Journal of Computational Intelligence in Bioinformatics, 20122012
31Lakshmi, P. T. V, Medicinal Plant Informatics- An Insight, , Pharmacognosy Communications, , 20122012
30Subhashini R and P.T.V. Lakshmi , Comparative Computational Analysis of Cystic Fibrosis Transmembrane Conductance Regulator Protein to Treat Lung Infections., , International Journal of Medical Engineering and Informatics, 20122012
29P.T.V. Lakshmi , Devi Priyanka, A. Annamalai, Study on the Docking Analysis of Homocitrate Synthase Responsible for Hydrogen Production in Nostoc Punctiforme ATCC29133, , American Journal of Bioinformatics Research. , 20122012
28Ponmari .G, Annamalai. A, Lakshmi P.T.V. , Evaluation of phytochemical constituents and antioxidant activities of successive solvent extracts of leaves of Indigofera caerulea Roxb using variousin vitro antioxidant assay systems, Elsevier, Asian Pacific Journal of Tropical Disease, 20122012
27R.Sathiskumar, P.T.V. Lakshmi and A.Annamalai, Estimation of biomass contents and phytoconstituent analysis of Enicostemma littorale blume, , Int. J. Pharma and Bio Sciences, 20122012
26Jayaprakash Chinnappan and Palanisamy Thangavelan Lakshmi, High-throughput virtual screening for novel DHFR inhibitors of P. Jiroveci from the zinc database, , Int. J. Applied biology and pharmaceutical technology, 20122012
25Annamalai.A, Christina V.L and P.T.V Lakshmi, Evaluation of Genetic Diversity in Cardiospermum halicacabum based on Geographical Variation Using RAPD Markers, , Pharmacognosy Communications, 20122012
24P.T.V. Lakshmi and Pa. Rajalakshmi, Identification of Phyto-components and its biological activities of Aloe vera through Gas Chromatography- Mass Spectrometry, , International Research Journal of Pharmacy, 20112011
23P.T.V. Lakshmi, A. Annamalai and C. Ramya, A Study on the Genetic Diversity Analysis of a Medicinally Potential Herb- Enicostemma littorale Blume (Gentianaceae), International Journal of Pharma and Bio Sciences, , 20112011
22P.T.V. Lakshmi, S. Radhika and A. Annamalai., Molecular Docking Analysis of Phyto-Ligands with Multi Drug Resistant β-lactamases of Staphylococcus aureus., Trends in Bioinformatics, , 20112011
21P.T.V. Lakshmi and Pa. Rajalakshmi, Insilico identification of potential inhibitors for farnesyl transferase from Aloe vera for cancer, International Journal of Pharma and Bio Sciences, , 20112011
20R. Sathishkumar, P.T.V. Lakshmi, A. Annamalai and V. Arunachalam, Mining of simple sequence repeats in the Genome of Gentianaceae, , Pharmacognosy Research , 20112011
19G. Ponmari, R. Sathishkumar, P.T.V. Lakshmi and A. Annamalai, Effect of drying treatment on the contents of Antioxidants in Cardiospermum halicacabum Linn, International Journal of Pharma and Bio Sciences, , 20112011
18Jayaprakash. C and P.T.V. Lakshmi, Pneumocystis jiroveci Pneumonia, , Asian Journal of Experimental Biological Sciences, 20112011
17Lakshmi P. T. V, Subashini S, In silico sequence specific analysis of ERBB2 RTK alterations responsible for neuroectodermal tumors of Homo sapiens, Journal of Bioinformatics and sequence analysis, , 20102010
16Jayaprakash. C, Subashini, S and P.T.V. Lakshmi, Sequence Based Information and Phylogenetic Analysis of Dihydrofolate Reductase in Pneumocystis., , International Journal of Genetic Engineering and Biotechnology, 20102010
15Lakshmi P.T.V*, S. Subashini , V. Sindhuja, A. Annamalai, R. Sathishkumar, Molecular Docking Analysis of β-Catenin of Medulloblastoma with Aloe - Emodin of Aloe Vera. , , International Journal of Biomedical Research and Analysis, 20102010
14R. Sathishkumar, P.T.V. Lakshmi and A. Annamalai, Comparative analyses of non enzymatic and enzymatic antioxidants of Enicostemma littorale Blume, International Journal of Pharma and Bio Sciences, , 20102010
13P.P. Karthikeyan, P.T.V. Lakshmi, C. K. Dwibedi, A. Annamalai , A database for human Y chromosome protein data, , Bioinformations, 20092009
12Annamalai.A and P.T.V Lakshmi, HPTLC and HPLC Analysis of Bioactive Phyllanthin from Different Organs of Phyllanthus amarus., , Asian Journal of Biotechnology, 20092009
11R. Sathishkumar, P.T.V. Lakshmi and A. Annamalai, Effect of Drying Treatment on the Content of Antioxidants in Enicostemma littorale Blume., , Research Journal of Medicinal Plant., 20092009
10P.T.V. Lakshmi, S. Uma Maheswari and A. Annamalai, Structure-function annotation and Phylogenetic strategy of nifH domain of a cyanobacterium- Chlorogloeopsis sp. , , Indian J. of Biotechnology. , 20092009
9P.T.V. Lakshmi, Uma Maheswari S., Karthikeyan P.P., and Annamalai A , Sequence and Structure Comparison Studies of Phycocyanin in Spirulina Platensis., , Journal of Computer Science & Systems Biology., 20082008
8P.T.V. Lakshmi and Annamalai A, The Effects of Cyanobacterial (Blue Green Algae) culture filtrates on the biomass and biochemicals of Withania somnifera Dunal., , Asian Journal of Plant Sciences , 20082008
7Annamalai.A and P.T.V Lakshmi, Biochemical Studies on the response of organo-phosphorus insecticide and release of extra cellular products by cyanobacteria., , Research J. of Fisheries and Hydrobiology, 20072007
6P.T.V. Lakshmi, An insight into Cyanobacterial genomics - a perspective. , , Bioinformations , 20072007
5P.T.V. Lakshmi, Uma Maheswari S, Annamalai A, Structure and function prediction of a hypothetical protein (Q307B9_SPIPL) of Spirulina platensis (Nordstedt) Geitler, Online Journal of Bioinformatics (OJB), , 20072007
4P.T.V. Lakshmi, S. Uma Maheswari, Functional Annotation of Cyano Bacterial Genera Chlorogloepsis. , , Bioinformatics Trends- A Journal of Bioinformatics and Applications. , 20072007
3P.T.V. Lakshmi and S. Uma Maheswari, Phylogenetic and Structural Analysis of ITS1 & ITS2 of Fasciolopsis buski. , , Bioinformatics Trends- A Journal of Bioinformatics and Applications. , 20062006
2P.T.V. Lakshmi, A. Annamalai and N. Anand, Effect of Cyanobacterial culture filtrate on the growth of Solanum nigrum. , , Journal of Medicinal and Aromatic Plant Sciences, 20052005
1Annamalai, A., PTV. Lakshmi, D. Lalithakumari and Murugesan, K, Optimization of biofertilizer on growth, biomass and seed yield of Phyllanthus amarus (Bhumyamalaki) in sandy loam soil. , , Journal of Medicinal and Aromatic Plant Sciences. , 20042004
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Sl.NoTitleYear of Publication
42Veena, V. K.; Kennedy, K.; Lakshmi, P.; Krishna, R.; Sakthivel, N, Anti-leukemic, anti-lung, and anti-breast cancer potential of the microbial polyketide 2, 4-diacetylphloroglucinol (DAPG) and its interaction with the metastatic proteins than the antiapoptotic Bcl-2 proteins, , Molecular and cellular biochemistry, 20162016
41Topno, N. S.; Kannan, M.; Krishna, R, Interacting mechanism of ID3 HLH domain towards E2A/E12 transcription factor - An Insight through molecular dynamics and docking approach, , Biochemistry and Biophysics Reports, 20152015
40Muthu, K.; Panneerselvam, M.; Topno, N. S.; Ramadas, K., Structural transition of ETS1 from an auto-inhibited to functional state upon association with the p16INK4a native and mutated promoter region, , RSC Advances, 20162016
39Lalitha, P.; Veena, V.; Vidhyapriya, P.; Lakshmi, P.; Krishna, R.; Sakthivel, N, Anticancer potential of pyrrole (1, 2, a) pyrazine 1, 4, dione, hexahydro 3-(2-methyl propyl) (PPDHMP) extracted from a new marine bacterium, Staphylococcus sp. strain MB30, Springer, Apoptosis : an international journal on programmed cell death , 20162016
38Parthiban, A.; Muthukumaran, J.; Manhas, A.; Srivastava, K.; Krishna, R.; Rao, H. S. P, Synthesis, in vitro and in silico antimalarial activity of 7-chloroquinoline and 4H-chromene conjugates, , Bioorganic and Medicinal Chemistry Letters, 20152015
37Parthiban, A.; Kumaravel, M.; Muthukumaran, J.; Rukkumani, R.; Krishna, R.; Surya Prakash Rao, H, Design, synthesis, in vitro and in silico anti-cancer activity of 4H-chromenes with C4-active methine groups, , Medicinal Chemistry Research, 20152015
36Panneerselvam, M.; Muthu, K.; Ramadas, K, Structural insights into tumor-specific chaperoning activity of gamma synuclein in protecting estrogen receptor alpha 36 and its role in tamoxifen resistance in breast cancer, , Molecular bioSystems, 20152015
35Muthu, K.; Panneerselvam, M.; Topno, N. S.; Jayaraman, M.; Ramadas, K., Structural perspective of ARHI mediated inhibition of STAT3 signaling: An insight into the inactive to active transition of ARHI and its interaction with STAT3 and importin�, , Cellular signalling, 20142014
34Liang, W.; Miao, S.; Zhang, B.; He, S.; Shou, C.; Manivel, P.; Krishna, R.; Chen, Y.; Shi, Y. E, Synuclein ? protects Akt and mTOR and renders tumor resistance to Hsp90 disruption, , Oncogene, 20152015
33Kennedy, R. K.; Veena, V.; Naik, P. R.; Lakshmi, P.; Krishna, R.; Sudharani, S.; Sakthivel, N., Phenazine-1-carboxamide (PCN) from Pseudomonas sp. strain PUP6 selectively induced apoptosis in lung (A549) and breast (MDA MB-231) cancer cells by inhibition of antiapoptotic Bcl-2 family proteins, , Apoptosis : an international journal on programmed cell death , 20152015
32Kennedy, R. K.; Naik, P. R.; Veena, V.; Lakshmi, B. S.; Lakshmi, P.; Krishna, R.; Sakthivel, N, 5-Methyl phenazine-1-carboxylic acid: a novel bioactive metabolite by a rhizosphere soil bacterium that exhibits potent antimicrobial and anticancer activities, , Chemico-biological interactions, 20152015
31Shao, Y.; Wang, B.; Shi, D.; Miao, S.; Manivel, P.; Krishna, R.; Chen, Y.; Eric Shi, Y, Synuclein gamma protects HER2 and renders resistance to Hsp90 disruption, , Molecular oncology, 20142015
30Parthiban, A.; Muthukumaran, J.; Moushumi Priya, A.; Jayachandran, S.; Krishna, R.; Surya Prakash Rao, H, Design, synthesis, molecular docking, and biological evaluation of N-methyl-3-nitro-4-(nitromethyl)-4H-chromen-2-amine derivatives as potential anti-cancer agents, , Medicinal Chemistry Research, 20142014
29Muthu, K.; Panneerselvam, M.; Topno, N. S.; Jayaraman, M.; Ramadas, K, Structural perspective of ARHI mediated inhibition of STAT3 signaling: An insight into the inactive to active transition of ARHI and its interaction with STAT3 and importin, Others Publisher, Cellular signalling, 20142014
28Kanagarajan, S.; Mutharasappan, N.; Dhamodharan, P.; Jeyaraman, M.; Ramadas, K.; Jeyaraman, J, Exploring the structural features of Aspartate Trans Carbamoylase (Tt ATCase) from Thermus thermophilus HB8 through in silico approaches: A potential drug target for inborn error of pyrimidine metabolism, , Journal of Biomolecular Structure and Dynamics, 20142014
27M. Kannan, P. Manivel, K. Geetha, J. Muthukumaran, H. Surya Prakash Rao and R. Krishna, Synthesis and in silico evaluation of 1N-methyl-1S-methyl-2-nitroethylene (NMSM) derivatives against Alzheimer disease: to understand their interacting mechanism with acetylcholinesterase, , J Chem Biol, 20122012
26Kannan Muthu, Manivel Panneerselvam, Muthukumaran Jayaraman, Nishith Saurav Topno, Arindam Atanu Das and Krishna Ramadas, Structural insights into interacting mechanism of ID1 protein with an antagonist ID1/3-PA7 and agonist ETS-1 in treatment of ovarian cancer: molecular docking and dynamics studies, , J Mol Model, 20122012
25Amit Goyal, Kannan, M., Manivel, P., Anil Kumar Pole & Krishna, R, Molecular dynamics simulation of the Staphylococcus aureus YsxC protein: molecular insights into ribosome assembly and allosteric inhibition of the protein, , J Mol Model, 20112011
24Amit Goyal, Kannan, M., Manivel, P., Anil Kumar Pole & Krishna, R, Molecular dynamics simulation of the Staphylococcus aureus YsxC protein: molecular insights into ribosome assembly and allosteric inhibition of the protein , , J Mol Model, 20112011
23Manivel, P., Muthukumaran, J., Kannan, M.& Krishna, R, Insight into residues involved in the structure and function of the breast cancer associated protein human gamma synuclein, , J Mol Model, 20112011
22Kannan, M.,Kandhasamy Kumaravel,Gnanasambandam Vasuki & Krishna R, Ethyl 2-(6-amino-5-cyano-3,4-dimethyl- 2H,4H-pyrano[2,3-c]pyrazol-4-yl)acetate, Others Publisher, Acta Cryst, 20102010
21Muthukumaran, J., Kannan, M., Vanitha, A., Bala Manimaran & Krishna, R, Bis(?-phenyltellurido-?2 Te:Te)bis[tetracarbonylrhenium(I)], , Acta Cryst, 20102010
20Vanitha, A., Muthukumaran, J., Krishna, R. & Bala Manimaran, Heptacarbonyl-1j3 C,2j4 C-(4-phenyl-pyridine-1jN)di-l-phenyltellurido-1:2K4Te:Te-dirhenium(I), , Acta Cryst, 20102010
19Kannan, M., Manivel, P., Sarathbabu, M., Sathishkumar, R., Surya Prakash Rao, H. & Krishna, R, 3-Benzyl-6-benzylamino-1-methyl-5-nitro-1,2,3,4-tetrahydropyrimidine, , E66,o515., 20102010
18R. Ramtekkar, K. Kumarvel, G. Vasuki, K. Sekar and R. Krishna, Computer-Aided Drug Design of Pyranopyrazoles and Related Compounds for Checkpo int Kinase-1, , Letters in Drug Design & Discovery, 20092009
17L. Vijayalakshmi, R. Krishna R. Sankaranarayanan and M. Vijayan, An Asymmetric Dimer of beta-lactoglobulin in a Low Humidity Crystal Form. Structural Changes that Accompany Partial Dehydration and Protein Action, , Prot.Struct.Func.Bio, 20082008
16R. Krishna, J.Rajan prabu, G. P. Manjunath, S.Datta, Nagasuma R. Chandra, K. Muniyappa, and M. Vijayan, Snapshots of RecA Protein Involving Movement of the C-domain and Different Conformations of the DNA-binding Loops: Crystallographic and Comparative Analysis of 11 Structures of Mycobacterium smegmatis RecA, Journal of Bioinformatics and Computational Biology, J.Mol.Biol, 20072007
15R. Krishna, G. P. Manjunath, P. Kumar, A. Surolia, Nagasuma R. Chandra, K. Muniyappa, and M. Vijayan, Crystallographic identification of an ordered C-terminal domain and a second nucleotide-binding site in RecA: new insights into allostery , Nucleic Acids Research, , 20062006
14K. Sekar, M. Yogavel, D. Gayathri, D. Velmurugan, R. Krishna, M.-J. Poi, Z. Dauter, M. Dauter and M.-D. Tsai, Atomic resolution structure of the double mutant (K53,56M) of bovine pancreatic phospholipase A2, , Acta Cryst, 20062006
13S. Datta, R. Krishna, N. Ganesh, Nagasuma R. Chandra, K. Muniyappa, and M. Vijayan, Crystal Structures of Mycobacterium smegmatis RecA and Its Nucleotide Complexes J, , Bacteriol, 20032003
12S. Bhaskaran, M. Yogavel, V. Rajakannan, R. Krishna, D. Velmurugan and V. Raghukumar, 5-Amino-4-(4-dimethylaminophenyl)-2-(4-methoxyphenyl)-7-(pyrrolidin-1-yl)-1,6-naphthyridine-8-carbonitrile, , Acta Cryst, 20032003
11R. Krishna, S. Selvanayagam, M. Yogavel, D. Velmurugan and S. Manikandan., [6a,16b]-cis-7,7-Dimethyl-6,6a,7,16b-tetrahydrochromeno[4',3':3,4]pyrano[3,2-c]�naphthocoumarin, , Acta Cryst, 20032003
10R. Krishna, S. Selvanayagam, M. Yogavel, D. Velmurugan, M.Shanmuga sundaram R. Raghunathan, S. Shanmuga Sundara Raj and H.-K. Fun., 1,2,3,4,4a,12a-Hexahydro-2,5,5-trimethyl-1H-[2]benzopyrano[3,2-c]coumarin, , Acta Cryst, 20032003
9 R. Krishna, P. G. Aravindan, M. Yogavel, D. Velmurugan, S. Shanmuga Sundara Raj, H.-K. Fun and P. C. Srinivasan, 3-(1-Phenylsulfonyl-2-methylindol-3-ylcarbonyl)propanoic acid, , Acta Cryst, 20032003
8R. Krishna, P. G. Aravindan, M. Yogavel, D. Velmurugan, S. Shanmuga Sundara Raj, H.-K. Fun, M. Shanmuga Sundaram and R. Raghunathan, 6a,14a-cis-6,6a,7,14a-Tetrahydrochromeno[4',3':3,4]pyrano[3,2-c]coumarin, , Acta Cryst, 20032003
7 R. Krishna, D. Velmurugan, M. Shanmugasundaram, R. Raghunathan, K Sekar, S. Shanmuga Sundara Raj, H-K. Fun, Crystal Structure Analysis of 1',2',3',4'-tetrahydro-1,3-diphenyl-4-chlorospiro[2-pyrazoline-5,2-napthalen]1'one, , Cryst. Res. Technol. 37, 20022002
6R. Krishna, D. Velmurugan, S. Shanmuga Sundara Raj, H.-K. Fun, M. S. Sundaram, R. Raghunathan, Crystal Structure Analysis of a New Coumarin Derivative, , Cryst. Res. Technol. 36, 20012001
5R. Krishna, D. Velmurugan, S. Shanmuga Sundara Raj, H.-K. Fun, P. C. Srinivasan, Crystal Structure Analysis of 3�5�(dichloro phenyl)�3-ethyl-5-phenyl thio indalo [1,2-e]imidazolidine., , Cryst. Res. Technol. 36 , 20012001
4K. SethuSankar, S. Banumathi, R. Krishna and D. Velmurugan, 2,2'-Methylenebis(3-hydroxy-2-cyclohexen-1-one, , Acta Cryst, 20002000
3R. Krishna, D. Velmurugan, G. Babu and P. T. Perumal, N-H(indole) intermolecular interactions in 3,3'-benzylidenediindole, , Acta Cryst, 19991999
2R. Krishna, D. Velmurugan, R. Murugesan, M. Shanmuga Sundaram and R. Raghunathan, 1',2',3',4'-Tetrahydro-1,3-diphenyl-4-p-tolylspiro[2-pyrazoline-5,2'-naphthalen]-1'-one, , Acta Cryst, 19991999
1R. Krishna, D. Velmurugan and S. Shanmuga Sundara, Bis(indol-3-yl)(4-methylphenyl)methane, , Acta Cryst, 19991999
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18Subastri, A.; Durga, A.; Harikrishna, K.; Sureshkumar, M.; Jeevaratnam, K.; Girish, K. S.; Thirunavukkarasu, C, Exploration of disulfiram dealings with calf thymus DNA using spectroscopic, electrochemical and molecular docking techniques, , Journal of Luminescence, 20162016
17Sharma, O. P.; Kumar, M. S, Essential proteins and possible therapeutic targets of Wolbachia endosymbiont and development of FiloBase-a comprehensive drug target database for Lymphatic filariasis, , Scientific reports, 20162016
16Suyavaran, A.; Ramamurthy, C.; Mareeswaran, R.; Shanthi, Y. V.; Selvakumar, J.; Mangalaraj, S.; Kumar, M. S.; Ramanathan, C. R.; Thirunavukkarasu, C, Synthesis and biological evaluation of isoindoloisoquinolinone, pyroloisoquinolinone and benzoquinazolinone derivatives as poly(ADP-ribose) polymerase-1 inhibitors, , Bioorganic & medicinal chemistry, 20152015
15Subastri, A.; Ramamurthy, C. H.; Suyavaran, A.; Mareeswaran, R.; Lokeswara Rao, P.; Harikrishna, M.; Suresh Kumar, M.; Sujatha, V.; Thirunavukkarasu, C, Spectroscopic and molecular docking studies on the interaction of troxerutin with DNA. , , International journal of biological macromolecules, 20152015
14 Subastri, A.; Ramamurthy, C. H.; Suyavaran, A.; Lokeswara Rao, P.; Preedia Babu, E.; Hari Krishna, K.; Suresh Kumar, M.; Thirunavukkarasu, C, Probing the interaction of troxerutin with transfer RNA by spectroscopic and molecular modeling, , Journal of photochemistry and photobiology. B, Biology, 20152015
13Sharma, O. P.; Hari Krishna, K.; Suresh Kumar, M., Probing the Structural and Conformational Stability of the Wb-iPGM Enzyme and Role of Mn2+ Ions in Their Catalytic Site, , International Journal of Peptide Research and Therapeutics , 20152015
12Preedia Babu, E.; Subastri, A.; Suyavaran, A.; Lokeshwara Rao, P.; Suresh Kumar, M.; Jeevaratnam, K.; Thirunavukkarasu, C., Extracellularly synthesized ZnO nanoparticles interact with DNA and augment gamma radiation induced DNA damage through reactive oxygen species, , RSC Advances, 20152015
11Thirunavukarasou, A.; Govindarajalu, G.; Singh, P.; Bandi, V.; Muthu, K.; Baluchamy, S., Cullin 4A and 4B ubiquitin ligases interact with ?-tubulin and induce its polyubiquitination, Molecular & Cellular Proteomics, Molecular and cellular biochemistry , 20142014
10Chandrasekar, S.; Sharma Om, P.; Srinivasapriyan, V.; SureshKumar, M.; Ramanathan, C. R., Ethyl trans-12-(pyridin-4-yl)-9,10-ethano-anthracene-11-carboxyl-ate. Acta crystallographica, , Acta crystallographica. Section E, Structure reports online, 20142014
9Banavath, H. N.; Sharma, O. P.; Kumar, M. S.; Baskaran, R., Identification of novel tyrosine kinase inhibitors for drug resistant T315I mutant BCR-ABL: a virtual screening and molecular dynamics simulations study, , Scientific reports , 20142014
8Panneer Selvam Suresh, Olujide Olubiyi, Chinnasamy Thirunavukkarasu, Birgit Strodel, Muthuvel Suresh Kumar., Molecular modeling of human alkaline sphingomyelinase , Bioinformation, , 20112011
7K. Sunitha, M. Hemshekhar, S. L. Gaonkar, M. Sebastin Santhosh, M. Suresh Kumar, Basappa, B. S. Priya , K. Kemparaju, K. S. Rangappa, S. Nanjunda Swamy K. S. Girish, Neutralization Of Hemorrhagic Activity Of Viper Venoms By 1-(3-Dimethylaminopropyl)-1-(4-Fluorophenyl)-3-Oxo-1,3- Dihydroisobenzofuran-5-Carbonitrile , , Basic and Clinical Pharmacology and Toxicology, 20112011
6K. Sunitha, M. Hemshekhar, M. Sebastin Santhosh, M. Suresh Kumar, K. Kemparaju, K. S. Girish, Inhibition of Hemorrhagic Activity of Viper Venoms by N-acetyl Cysteine: Involvement of N-acetyl and Thiol Groups, , Curr. Top. Med. Chemistry, 20112011
5R. Manohar, M. Harikrishna, C. R. Ramanathan, M. SureshKumar and K. Gunasekaran, 1,7,8,9,10,10-Hexachloro-4-(2-phenylethyl)- 4- azatricyclo [5.2.1.02,6] dec-8-ene-3,5-dione, , Acta Cryst, 20112011
4Vannakambadi K. Ganesh, Suresh Kumar Muthuvel, Scott A. Smith, Girish J. Kotwal, and Krishna H. M. Murthy, Structural Basis for Antagonism by Suramin of Heparin Binding to Vaccinia Complement Protein, , Biochemistry , 20052005
3M.Suresh Kumar, M.Carson, M.Mahmood Hussain and H.M.Krishna Murthy, Structures of Apolipoprotein A-II and a Lipid-surrogate complex provide insights into Apolipoprotein � Lipid Interactions, , Biochemistry, 20022002
2R.Sugadev, D.Balasundaresan, K.K.Chacko, M.N.Ponnuswamy and M.Suresh Kumar , 9,10-Bis(3-hy­droxy-3,3-di­phenyl­prop-1-ynyl)­anthracene N,N′-di­methyl­form­amide solvate, , Acta Cryst, 20022002
1M.Suresh Kumar, M.N.Ponnuswamy, S.Ponnuswamy, R.Jeyaraman, K.Panneerselvam and Manuel Soriano-Garcia, Ethyl 3,5-Dimethyl-4-oxo-cis-2,6-diphenylpiperidine-1-carboxylate, , Acta Cryst, 19981998
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Sl. NoTitleYear of Publication
25Pan, A.; Lahiri, C.; Rajendiran, A.; Shanmugham, B, Computational analysis of protein interaction networks for infectious diseases, Briefings in Bioinformatics, , 20152015
24Ezhilarasan, V.; Jadhav, A.; Pan, A, Screening of potent antibacterial agents targeting Clostridium difficile virulence factor toxin B: An in silico approach, , Medicinal Chemistry Research, 20142015
23Chikhale, R.; Thorat, S.; Pan, A.; Jadhav, A.; Thatipamula, K. C.; Bansode, R.; Bhargavi, G.; Karodia, N.; Rajasekharan, M. V.; Paradkar, A.; Khedekar, P., Design, synthesis and pharmacological evaluation of pyrimidobenzothiazole-3-carboxylate derivatives as selective L-type calcium channel blockers, , Bioorganic & medicinal chemistry, 20152014
22Jadhav, A.; Shanmugham, B.; Rajendiran, A.; Pan, A, Unraveling novel broad-spectrum antibacterial targets in food and waterborne pathogens using comparative genomics and protein interaction network analysis, , Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases , 20142014
21Archana Pan, Chandrajit Lahiri, Anjana Rajendiran, Buvaneswari Shanmugham, Computational analysis of protein interaction networks for infectious diseases, , Brief Bioinform, 20152014
20Ankush Jadav, Buvaneswari Shanmugham, Anjana Rajendiran, Archana Pan, Unraveling novel broad-spectrum antibacterial targets in food and waterborne pathogens using comparative genomics and protein interaction network analysis, , Infect Genet Evol, 20142014
19Vijayalakshmi Ezhilarasan, Ankush Jadav, Archana Pan,, Screening of potent antibacterial agents targeting Clostridium difficile virulence factor toxin B: An in silico approach, , Med Chem Res, 20142014
18Buvaneswari Shanmugham, Archana Pan, Identification and characterization of potential therapeutic candidates in emerging human pathogen Mycobacterium abscessus: A novel hierarchical in silico approach, PLoS One, , 20132013
17Ankush Jadav, Vijayalakshmi Ezhilarasan, O.P. Sharma, Archana Pan, Clostridium-DTdb:A comprehensive database for potential drug targets of Clostridium difficile, , Comput Biol Med, 20132013
16Vijayalakshmi Ezhilarasan, O.P. Sharma, Archana Pan, In silico identification of potential drug targets in Clostridium difficile R20291: Modeling and virtual screening analysis of a candidate enzyme MurG, , Med Chem Res, 20132013
15Aditya Sharma, Archana Pan,, Identification of potential drug targets in Yersinia pestis using metabolic pathway analysis: MurE ligase as a case study, , Eur J Med Chem , 20122012
14M. Bhattacharjee, R. Raju, A. Radhakrishnan, V. Nanjappa, B. Muthusamy, K. Singh, D. Kuppusaami, B.T. Lingala, A. Pan, P.P. Mathur, H. C. Harsha, T. S. Keshava Prasad, G. J. Atkins, A. Pandey and A. Chatterjee,, A Bioinformatics Resource for TWEAK-Fn14 Signaling Pathway, Journal of Bioinformatics and Computational Biology, J of Signal Transduction, 20122012
13O.P Sharma, Archana Pan, S. L. Hoti, Anlush Jadav, M. Kannan and P.P. Mathur, Modeling, docking, simulation, and inhibitory activity of the benzimidazole analogue against �-tubulin protein from Brugia malayi for treating lymphatic filariasis, , Med Chem Res , 20122012
12Renu G, Rajesh R., Jagadeesha M., Ghantasala S. Sameer K., Krishna G., Amit K., T. Pragna Lakshmi, Jyoti S., Rakesh S., Lavanya B, Archana Pan, et al, Signaling Network of Thyroid-Stimulating Hormone, Journal of Proteomics & Bioinformatics, , 20112011
11Archana Pan, Ipsita Chanda. Jayprokas Chakrabarti, Analysis of the genome and proteome composition of Bdellovibrio bacteriovorus: Indication for recent prey-derived horizontal gene transfer, Genomics, , 20112011
10Sourav RoyChoudhury, Archana Pan, Debaprasad Mukherjee, Genus specific evolution of codon usage and nucleotide compositional traits of poxviruses, , Virus Genes , 20112011
9Srinivasan Ramachandran, Amit Katiyar, Amit Sinha, Anshu Bharadwaj, Anirban Dutta, Ayush Raman, Archana Pan, Balwant K. Malik, Balvinder Singh, Beena Pillai, et al, Mycobacterium tuberculosis systems biology data in R, , Biobytes , 20092009
8Ipsita Chanda, Archana Pan, Sanjoy Kr. Saha, Chitra Dutta, Comparative Codon and Amino Acid Composition Analysis of Tritryps-Conspicuous Features of Leishmania major, , FEBS Letter, 20072007
7Ipsita Chanda, Archana Pan, Chitra Dutta, Proteome composition in Plasmodium falciparum- Higher usage of GC-rich non-synonymous codons in highly expressed genes, Journal of Bioinformatics and Computational Biology, , 20052005
6 Sabyasachi Das, Subhagata Ghosh, Archana Pan, Chitra Dutta, Compositional variation in bacterial genes and proteins with potential expression level, , FEBS Letter, 20052005
5 Sabyasachi Das, Archana Pan, Sandip Paul, Chitra Dutta,, Comparative analyses of codon and amino acid usage in symbiotic island and core genome in nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum, , J. Biomol Struct Dyn, 20052005
4Chitra Dutta and Archana Pan, Horizontal gene transfer and bacterial diversity, Journal of Bioinformatics and Computational Biology, J Biosci , 20022002
3Archana Pan, Chitra Dutta, Jyotirmoy Das, Codon usage in highly expressed genes of Haemophilus influenzae and Mycobacterium tuberculosis: translational selection versus mutational bias, Elsevier, Gene , 19981998
2Soumalee Basu, Archana Pan, Chitra Dutta, Jyotirmoy Das, Chaos Game Representation of Proteins, Journal of Molecular Graphics and Modelling, J Mol Graph, 19971997
1Archana Pan, Soumalee Basu, Chitra Dutta, Debi Prasad Burma, Ranjana Mukherjee, Nucleotide frequency map: A new technique for the pictorial representation of dinucleotide frequencies, Cancer Informatics, Curr Sc, 19961996
26Ipsita Chanda, Archana Pan, Comparative studies of proteomes from extremophiles:elucidation of trends of thermal adaptation, Biomathematics & Systems Biology, 20162016
27Anjana Rajendiran, Aniruddha Chatterjee, Archana Pan, Computational approaches and related tools to identify microRNAs in a species: A bird’s eye view, Interdisciplinary Sciences: Computational Life Sciences, 20172017
28Jyoti Prava, Pranavathiyani G, Archana Pan, Functional assignment for essential hypothetical proteins of Staphylococcus aureus N315. International Journal of Biological Macromolecules, 20182018
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SL. NoTitleYear of Publication
33Ikrormi Rungsung, Muthukumaran Rajagopalan, Amutha Ramaswamy., Molecular dynamic study of TMPA mediated dissociation of Nur77-LKB1 complex., Computational Biology and Chemistry, Vol 76, Pages 67-782018
32Nivedita Rai, R. Muthukumaran, R. Amutha., Identification of inhibitor against H. pylori HtrA protease using structure-based virtual screening and molecular dynamics simulations approaches, Microbial Pathogenesis., Vol 118, Pages 365-3772018
31Bindu Madhuri Cavuturu, Vishwambar Vishnu Bhandare, Amutha Ramaswamy Neelakantan Arumugam, Molecular dynamics of interaction of Sesamin and related compounds with the cancer marker β-catenin: an in silico study, Journal of Biomoecular Structure and Dynamics, doi.org/10.1080/07391102.2018.1442250
2018
30Ikrormi Rungsung, Amutha Ramaswamy, Effects of Peutz-Jeghers syndrome (PJS) causing missense mutations L67P, L182P, G242V and R297S on the structural dynamics of LKB1 (Liver kinase B1) protein, Journal of Biomolecular structure and Dynamics, doi.org/10.1080/07391102.2018.1441070. 2018
29Amutha Ramaswamy, Daryna Smyrnova, Mathy Froeyen, Mohitosh Maiti, Piet Herdewijn, Arnout Ceulemans., Molecular Dynamics of Double Stranded Xylo-Nucleic Acid, Journal of Chemical Theory and Computation 13 (10), 5028-50382017
28M Rajagopalan, S Balasubramanian, A Ramaswamy., Structural dynamics of wild type and mutated forms of human L1 endonuclease and insights into its sequence specific nucleic acid binding mechanism: A molecular dynamics study, Journal of Molecular Graphics and Modelling 76, 43-552017
27M Rajagopalan, S Balasubramanian, A Ramaswamy., Insights into the RNA binding mechanism of human L1-ORF1p: a molecular dynamics study, Molecular BioSystems 13 (9), 1728-17432017
26VV Bhandare, A Ramaswamy., The proteinopathy of D169G and K263E mutants at the RNA Recognition Motif (RRM) domain of tar DNA-binding protein (tdp43) causing neurological disorders: A computational study, 1-192017
25M Rajagopalan, S Balasubramanian, I Ioshikhes, A Ramaswamy., Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115, 122, European Biophysics Journal 46 (5), 471-4842017
24Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D Andrake, Amutha Ramaswamy., Journal of Biomolecular Structure and Dynamics., 1-172016
23Ikrormi R.; Amutha R, Insights into the structural dynamics of Liver kinase B1 (LKB1) by the binding of STe20 Related Adaptera (STRADa) and Mouse protein 25a (MO25a) co-activators, Journal of Biomolecular Structure and Dynamics, 35 (5), 1138-11522016
22Sangeetha, B.; Muthukumaran, R.; Amutha, R., structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase, Journal of Computer-Aided Molecular Design,29 (4), 371-3852016
21Vishwambhar V.B.; Amutha R., Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study, Computational Biology and Chemistry, 61, 97-1082016
20Vishwambhar V. B.; Amutha R., Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43, Advances in Bioinformatics, doi.org/10.1155/2016/87928142016
19Rai, N.; Ramaswamy, A., Temperature dependent dynamics of DegP-trimer: A molecular dynamics study, Computational and Structural Biotechnology Journal, 13, 329-3382015
18Muthukumaran, R.; Sangeetha, B.; Amutha, R., conformational analysis on the wild type and mutated forms of human ORF1p: a molecular dynamics study, Molecular Biosystems,11 (7), 1987-19992015
17Sangeetha, B.; Muthukumaran, R.; Amutha, R., The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain, , European Biophysics, 43 (10-11), 485-4982014
16B Sangeetha, R Muthukumaran, R Amutha., Pharmacophore modelling and electronic feature analysis of hydroxamic acid derivatives, the HIV integrase inhibitors, SAR and QSAR in Environmental Research 24 (9), 753-7712013
15R. Muthukumaran, B. Sangeetha, R. Amutha and P.P. Mathur, Development of Anti-HIV Activity models of Lysine Sulfonamide Analogues: A QSAR Perspective., , Current Computer Aided Drug Design, 8 (1), 70-822012
14S Balasubramanian, M Rajagopalan, A Ramaswamy., Structural dynamics of full-length retroviral integrase: a molecular dynamics analysis, Journal of Biomolecular Structure and Dynamics 29 (6), 1163-11742012
13M Kohitosh,S Vanessa,A Mikhai,L Eveline,R Helmut,F Mathy,R Amutha,C Arnout,M Andreas,H Piet., Solution Structure and Conformational Dynamics of Deoxyxylonucleic Acid (dXNA): An Orthogonal Nucleic Acid Candidate, Chemistry - A European Journal, 18 (3), 869-879 2012
12Ramaswamy, Amutha; Froeyen, Mathy; Herdewijn, Piet; Ceulemans, Arnout , he helical structure of xylose-DNA, , Journal of the American Chemical Society, 132 (2), 587-5952010
11Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone, , BMC Structural Biology, 20072007
10Amutha Ramaswamy, Ivet Bahar and Ilya Ioschikhes. , Structural Dynamics of Nucleosome Core Particle: Comparison with Nucleosomes Containing Histone Variants Proteins:, , Structure,Function and Bioinformatics, 20052005
9Li wang, Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of nucleosome arrays: Influence of variant histone H2A, , Proc. IEEE 5th Symposium on Bioinformatics and Bioengineering (BIBE'05),, 20052005
8Ramakrishnan Parthasarathi, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami. , Bader's and reactivity descriptors analysis on DNA base pairs, , journal of physical chemistry A, 20042004
7Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Role of twist and slide on the solvation of stacked cytosine dimer: an ab initio study, , theoretical chemistry accounts, 20022002
6Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Free energy calculation for DNA bases in various solvents using Flory-Huggins theory, , Chemical Physics Letters, 20012001
5Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair, Interaction of benzidine with DNA: experimental and modelling studies, , Chemical Physics Letters, 20012001
4Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami., Assessment of importance of solvent in the calculation of condensed Fukui function: A self-consistent reaction field calculation study, , Chemical Physics Letters, 19991999
3Shivaramu, Amutha Ramaswamy and Vaithyanathan Ramprasath., Effective atomic numbers and mass attenuation coefficients of some thermoluminescent dosimetric compounds for total photon interaction, , Nuclear Science And Engineering, 19991999
2Venkatesan Subramanian, Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Jagnathan Padmanabhan and Thirumalachari Ramasami., Hardness profile of Interaction of HF with He, Ne and Ar: Density functional and MP2 calculation, , Chemical Physics Letters, 19981998
1Venkatesan Subramanian, Krishnaswamy Chitra, Dakshinamoorthy Sivanesan, Amutha Ramaswamy and Sambasivam Sankar., Ab initio potential energy surface of Ne...CO complex, Chemical Physics Letters, 19981998
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1414. B-cell and T-cell epitope identification with stability analysis of AI-2 import ATP-binding cassette LsrA from S. typhi eIn silico approach. Princy Vijayababu, Gopinath Samykannu, Christian Bharathi Antonyraj, SundaraBaalaji Narayanan, Syed Ibrahim Basheer Ahamed, Perumal Perumal, Shanmughavel Piramanayagam,. Microbial Pathogenesis 123 (2018) 487–495. 2018
1313. Cloning, over expression, purification of bacteriocin enterocin-B and structural analysis, interaction determination of enterocin-A, B against pathogenic bacteria and human cancer cells. Dasari A, Esakkiraj P, Christian Bharathi A, Ayyanna R, Venkatesh P, Syed Ibrahim B, Venkatesan Arul. International Journal of Biological Macromolecules 116 (2018) 502–512. IF: 3.6712018
1212. Patulin interference with ATP binding cassette transferring auto inducer _2 in Salmonella typhi and biofilm inhibition via quorum sensing. Princy Vijayababu, Gopinath, S, Christian Bharathi, A, Thomas, J, Sundara Baalaji, N, Syed Ibrahim, B, Shanmughavel, P. Informatics in Medicine Unlocked 11 (2018) 9–14. IF: 2.5252018
11Investigations of binding mode insight in Salmonella typhi type-III secretion system tip protein (SipD): A molecular docking and MD simulation study. Samykannu G, Princy V, Christian Bharathi A, Sundara Baalaji N, Syed Ibrahim B,. Informatics in Medicine Unlocked, 9, 166–172 (2017). 2017
10Understanding Russell's viper venom factor V activator's substrate specificity by surface plasmon resonance and in-silico studies. Pradeep K. Yadav, Christian B. Antonyraj, Syed Ibrahim Basheer Ahamed*, Sistla Srinivas, Plos One, 12(7), 1-22, (2017 )2017
9Molecular characterization and application of lipase from Bacillus sp.PU1 and investigation of structural changes based on pH andtemperature using MD simulation. Palanichamy Esakkiraj, Christian Bharathi Antonyraj, Balraj Meleppat, Dasari Ankaiah, Repally Ayyanna, Syed Ibrahim Basheer Ahamed,∗,Venkatesan Arul∗, International Journal of Biological Macromolecules 103, 47–56, (2017)2017
8Exploring the binding mechanism and kinetics of Piperine with snake venom secretory Phospholipase A2. Christian Bharathi, Sistla Srinivas & B. Syed Ibrahim, Journal of Biomolecular Structure and Dynamics, (2017)2017
7Bharathi, A. C.; Yadav, P. K.; Syed Ibrahim, B., Sequence diversity and ligand-induced structural rearrangements of viper hyaluronidase, , Molecular Biosystems, 20162016
6B. Syed Ibrahim, N. Kanneganti, G.E. Rieckhof, A. Das, D.V.Laurents, J.B.Palenchar, V. Bellofatto, and David A. Wah, Structure of the C-terminal domain of transcription factor IIB from Trypanosoma brucei, Proceedings of the National Academy of Sciences, , 20092009
5B. Syed Ibrahim and Vasantha Pattabhi, Trypsin inhibition by a peptide hormone: Crystal structure of trypsin-vasopressin complex, , Journal of Molecular Biology, 20052005
4B. Syed Ibrahim and Vasantha Pattabhi, Role of weak interactions in thermal stability of proteins, , Biophysical and Biochemical Research Communications, 20042004
3B. Syed Ibrahim, N. Shamaladevi and Vasantha Pattabhi, Trypsin Activity reduced by an Autocatalytically produced nonapeptide, , Journal of Biomolecular Structure and Dynamics, 20042004
2B. Syed Ibrahim and Vasantha Pattabhi, Crystal structure of trypsin-turkey egg white inhibitor complex, , Biophysical and Biochemical Research Communications, 20032003
1L. Damodharan, B. Syed Ibrahim, Vasantha Pattabhi, Somnath Halder and Sambasivarao Kotha, Anti - 2, 19 - Diethoxylcarbonyl - 2, 19 - diformylamino [3.2.3.2] paracyclophane , , Archive of Acta Crystallographica Section E, 20022002
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AuthorsTitleYear of PublicationJournal link
Subhomoi Borkotoky,
Ayaluru Murali
The highly efficient T7 RNA polymerase: A wonder macromolecule in biological realm2018International Journal of Biological Macromolecules
Jobina Rajkumari,
Subhomoi Borkotoky,
Ayaluru Murali,
Kitlangki Suchiang,
Saswat Kumar Mohanty,
Siddhardha Busi
Cinnamic acid attenuates quorum sensing associated
virulence factors and biofilm formation in Pseudomonas
aeruginosa PAO1
2018Biotechnology Letters
Jobina Rajkumari,
Subhomoi Borkotoky,
Ayaluru Murali, Kitlangki Suchiang,
Saswat Kumar Mohanty,
Siddhardha Busi
Attenuation of quorum sensing controlled virulence factors and biofilm formation in Pseudomonas aeruginosa by pentacyclic triterpenes, betulin and betulinic acid2018Microbial Pathogenesis
Subhomoi Borkotoky, and
Ayaluru Murali.
A computational assessment of pH dependent
differential interaction of T7
lysozyme with T7 RNA polymerase
2017BMC Structural Biology
Subhomoi Borkotoky,
Chetan Kumar Meena,
Gopalkrishna M. Bhalerao and
Ayaluru Murali
An in-silico glimpse into the pH dependent structural changes of T7 RNA polymerase: a protein with
simplicity
2017Scientific Reports
Mohammad Wahab Khan,
Ayaluru Murali.
Modeling of alcohol oxidase enzyme of Candida boidinii and in silico analysis of competitive binding of proton ionophores and FAD with enzyme.2017Molecular BioSystems
Gopu, V.;
Meena, C. K.;
Murali, A.;
Shetty, P. H.
Petunidin as a competitive inhibitor of acylated homoserine lactones in Klebsiella pneumoniae.2016RSC Advances
Meena C.K.;
Borkotoky, S.;
Murali, A.
Insight into virus encapsulation mechanism through in silico interaction study between coat protein and RNA operator loops of Sesbania mosaic virus.2016Molecular BioSystems
Subhomoi Borkotoky,
Chetan Kumar Meena,
Ayaluru Murali.
Interaction Analysis of T7RNA Polymerase with Heparin and its Low Molecular Weight Derivatives – An in silico Approach.2016Bioinformatics and Biology Insights
Gopu, V.;
Meena, C. K.;
Murali, A.;
Shetty, P. H.
Quorum quenching activity in the cell-free lysate of Enterobacter ludwigii isolated from beef and its effect on quorum sensing regulation in Yersinia enterocolitica.2016RSC Advances
Singh, V.;
Borkotoky, S.;
Murali, A.;
Rao, J. L.;
Rao, T. K.;
Dhoble, S. J.
Electron paramagnetic resonance and photoluminescence investigation on ultraviolet-emitting gadolinium-ion-doped CaAl(1)(2)O(1)(9) phosphors. 2015Spectrochimica Acta Part A Molecular and biomolecular spectroscopy
Subhomoi Borkotoky,
Chetan Kumar Meena,
Aswathy Soman,
Ayaluru Murali.
Insight into the LGP2 Helicase Domain – An in Silico Approach. 2015International Journal of Biochemistry Biophysics.
Longkumer T,
Kamireddy S,
Muthyala VR,
Akbarpasha S,
Pitchika GK,
Kodetham G,
Murali A,
Siddavattam D.
Acinetobacter phage genome is similar to Sphinx 2.36, the circular DNA copurified with TSE infected particles. 2013Scientific Reports
Borkotoky S,
Meena CK,
Khan MW,
Murali A.
Three dimensional electron microscopy and in silico tools for macromolecular structure determination. 2013EXCLI Journal
Borkotoky S,
Saravanan V,
Jaiswal A,
Das B,
Selvaraj S,
Murali A,
Lakshmi PTV.
The Arabidopsis Stress Responsive Gene Database. 2013International Journal of Plant Genomics
Goicochea NL,
Datta SAK,
Murali A,
Kao C,
Rein A,
Dragnea B.
Structure and Stoichiometry of Template-Directed Recombinant HIV-1 Gag particles. 2011Journal of Molecular Biology
S. Chinnaswamy,
A. Murali,
P. Li,
K. Fujisaki,
C. C. Kao
Regulation of De Novoinitiated RNA synthesis in Hepatitis C virus RNA-dependent RNA polymerase by intermolecular interactions.2010Journal of Virology
Chinnaswamy S,
Murali A,
Cai H,
Yi G,
Palaninathan S, Kao CC.
Conformations of the monomeric hepatitis C virus RNA-dependent RNA polymerase. 2010Journal of Virus Adaptation and Treatment
Daniel MC,
Tsvetkova IB,
Quinkert ZT,
Murali A,
De M,
Rotello VM,
Kao CC,
Dragnea B.
Role of surface charge density in nanoparticle-templated assembly of bromovirus proteins cages. 2010ACS Nano
Hema M,
Murali A,
Ni P,
Vaughan RC,
Fujisaki F,
Tsvetkova I,
Dragnea B,
Kao CC.
Effect of Amino-Acid Substitutions in the Brome Mosaic virus Capsid Protein on RNA Encapsulation. 2010Molecular Plant-Microbe Interactions
Motshwene PG,
Moncrieffe MC,
Grossmann JG,
Kao C,
Ayaluru M,
Sandercock AM,
Robinson CV,
Latz E,
Gay NJ.
An oligomeric signaling platform formed by the Toll-like receptor signal transducers MyD88 and IRAK-4.2009Journal of Biological Chemistry
Ranjith-Kumar CT,
Murali A,
Dong W,
Srisathiyanarayanan D,
Vaughan R,
Ortiz-Alacantara J,
Bhardwaj K,
Li X,
Li P,
Kao CC,
Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor.2009Journal of Biological Chemistry
Murali A,
Li X,
Ranjith-Kumar CT,
Bhardwaj K,
Holzenburg A,
Li P,
Kao CC.
Structure and Function of LGP2, a DEX(D/H) Helicase That Regulates the Innate Immunity Response. 2008Journal of Biological Chemistry
Gangloff M,
Murali A,
Xiong J,
Arnot CJ,
Weber AN,
Sandercock AM,
Robinson CV,
Sarisky R,
Holzenburg A,
Kao C,
Gay NJ.
Structural insight into the mechanism of activation of the Toll receptor by the dimeric ligand Spatzle. 2008Journal of Biological Chemistry
Zhu J,
Gopinath K,
Murali A,
Yi G,
Hayward SD,
Zhu H,
Kao C.
RNA-binding proteins that inhibit RNA virus infection. 2007Proceedings of the National Academy of Sciences (USA)
Sun J,
DuFort C,
Daniel MC,
Murali A,
Chen C,
Gopinath K,
Stein B,
De M,
Rotello VM,
Holzenburg A,
Kao CC,
Dragnea B.
Core-controlled polymorphism in viruslike particles. 2007Proceedings of the National Academy of Sciences (USA)
Rockcliffe DA,
Cammers A,
Murali A,
Russell WK,
DeRose VJ.
De novo design and spectroscopic characterization of a dinucleating copper-binding pentadecapeptide. 2006Inorganic Chemistry
Dixit SK,
Goicochea NL,
Daniel MC,
Murali A,
Bronstein L,
De M,
Stein B,
Rotello VM,
Kao CC,
Dragnea B,
Quantum dot encapsulation in viral capsids. 2006Nano Letters
Murali A,
Chakradhar RPS,
Rao JL.
Allowed and forbidden hyperfine structure of Mn2+ ions in sodium tetraborate glasses - an EPR and optical study. 2005Physica B-Condensed Matter
Kim NK,
Murali A,
DeRose VJ.
Separate metal requirements for loop interactions and catalysis in the extended hammerhead ribozyme. 2005Journal of American Chemical Society
Murali A,
Chakradhar RPS,
Rao JL.
EPR studies of Gd3+ ions in lithium tetra borotellurite and lithium lead tetra boro-tellurite glasses. 2005Physica B-Condensed Matter
Chary KVR,
Kumar CP,
Murali A,
Tripathi A,
Clearfield A.
Studies on catalytic functionality of V2O5/Nb2O5 catalysts. 2004Journal of Molecular Catalysis A:Chemical
Kim NK,
Murali A,
DeRose VJ.
A distance ruler for RNA using EPR and sitedirected spin labeling. 2004Chemistry and Biology
Kumar VR,
Chakradhar RPS,
Murali A,
Gopal NO,
Rao JL.
A study of electron paramagnetic resonance and optical absorption spectra of VO2+ ions in alkali barium phosphate glasses. 2003International Journal of Modern Physics
Murali A,
Chang ZX,
Ranjit KT,
Krishna RM,
Kurshev V,
Kevan L,
Structural characterization and study of adsorbate interactions with Cu(II) ions in SBA-15 materials by electron spin resonance and electron spin-echo modulation spectroscopies. 2002Journal of Physical Chemistry B
Prakash PG,
Murali A,
Rao JL.
EPR and optical absorption studies of Mn2+ ions in alkali borotellurite glasses. 2002Modern Physics Letters B
Prakash PG,
Murali A,
Rao JL.
EPR and optical absorption studies on Fe3+ ions in alkali borotellurite glasses. 2002Physics and Chemistry of Glasses
Chakradhar RPS,
Murali A,
Rao JL.
A study of electron paramagnetic resonance and optical absorption spectra of VO2+ ions in alkali calcium borate glasses. 2000Physica B Condensed Matter
Chakradhar RPS,
Murali A,
Rao JL,
A study of electron paramagnetic resonance and optical absorption in calcium manganese phosphate glasses containing praseodymium. 2000Journal of Materials Science
Murali A,
Rao JL.
Electron paramagnetic resonance and optical absorption spectra of Cr3+ ions in fluorophosphate glasses. 1999Journal of Physics-Condensed Matter
Murali A,
Rao JL.,
Spectroscopic investigations on Cu(II) ions doped in alkali lead borotellurite glasses. 1999Journal of Physics-Condensed Matter
Chakradhar RPS,
Murali A,
Rao JL.
Electron paramagnetic resonance and optical absorption studies of Cu2+ ions in alkali barium borate glasses. 1998Journal of Alloys and Compounds
Chakradhar RPS,
Murali A,
Rao JL.
Electron paramagnetic resonance and optical absorption studies of Fe(III) ions in alkali barium borate glasses. 1998Optical Materials
Chakradhar RPS,
Murali A,
Rao JL.
A study of electron paramagnetic resonance and optical absorption in calcium chromium phosphate glasses containing praseodymium. 1998Journal of Alloys and Compounds
Murali A,
Rao JL,
Subbaiah AV.
Electron paramagnetic resonance and optical absorption studies on vanadyl doped alkali tetraborate glasses. 1997Journal of Alloys and Compounds
Murali A,
Rao JL,
Narendra GL,
Harinathudu T.
Electron paramagnetic resonance and optical absorption spectra of Fe(III) ions in lead acetate glasses. 1997Optical Materials
Rao JL,
Murali A,
Rao ED.
Electron paramagnetic resonance and optical absorption spectra of Fe(III) ions in alkali zinc borosulphate glasses. 1996Journal of Non-Crystalline Solids
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Sl. NoAuthorsTitleJournalYear of PublicationVolume and Page No
71Ashok Sharma, Badvel Pallavi, Riddhidev Banerjee, Mariasoosai Ramya Chandar Charles, Mohane Selvaraj Coumar, Subhash Chander, Murugesan Sankaran, Paritosh ShuklaDe novo Design and in-silico Studies of Coumarin Derivatives as Inhibitors of Cyclin Dependent Kinase-2Journal of Pharmaceutical Chemistry20174, 46-56
70Syed SB, Arya H, Fu IH, Yeh TK, Periyasamy L Hsieh HP, Coumar MS*Targeting P-glycoprotein: Investigation of piperine analogs for overcoming drug resistance in cancerScientific reports20177(1):7972
69Singh P, Sailu S, Palchamy E, Coumar MS, Baluchamy SIdentification of a novel leukemic-specific splice variant of DNMT3B and its stability.Medical Oncology201734(8):145.
68Mamta Verma, Ramya Chandar Charles. M, Baskar Chakrapani, Mohane Selvaraj Coumar, Gayathri Govindaraju, Arumugam Rajavelu, Sreenivas Chavali & Arunkumar Dhayalan.PRMT7 INTERACTS WITH ASS1 AND CITRULLINEMIA MUTATIONS DISRUPT THE INTERACTION.J. Molecular Biology2017429(15), 2278-2289
67Hemant Arya, Safiulla Basha Syed, Sorokhaibam Sureshkumar Singh, Dinakar R. Ampasala and Mohane Selvaraj Coumar*.INVESTIGATIONS OF CHEMICAL CONSTITUENTS OF CLERODENDRUM COLEBROOKIANUM IN ANTI-HYPERTENSIVE DRUG TARGETS USING DOCKING AND MOLECULAR DYNAMICS SIMULATIONSInterdisciplinary Sciences: Computational Life Sciences2017
66Vivek Kumar Singh and Mohane Selvaraj Coumar*ENSEMBLE-BASED VIRTUAL SCREENING: IDENTIFICATION OF POTENTIAL ALLOSTERIC INHIBITOR OF BCR-ABLJ Moecular Modeling201723 (7), 218
65Larance Ronsard, Nilanjana Ganguli, Vivek Kumar Singh, Kumaravel Mohankumar, Tripti Rai, Subhashree Sridharan, Sankar Pajaniradje, Binod Kumar, Suhnrita Chaudhuri, Mohane Selvaraj Coumar, Vishnampettai G Ramachandran and Akhil C Banerjea. IMPACT OF GENETIC VARIATIONS IN HIV-1 TAT ON LTR-MEDIATED TRANSCRIPTION VIA TAR RNA INTERACTION: EMERGENCE OF VIRULENT STRAINS AMONG HIV-1 INFECTED NORTH INDIANS. Frontiers. Microbiology20178:706
64Gopichand Chinta, Mohane Selvaraj Coumar and Latha Periyasamy. REVERSIBLE TESTICULAR TOXICITY OF PIPERINE ON MALE ALBINO RATS. Pharmacognosy Magazine201713 (Suppl 3), S525
63Phanikrishna P, Sailu Sarvagalla, Bindu Madhuri, Sankar Pajaniradje, Vinitha Baskaran, Mohane Selvaraj Coumar, & R. Baskaran. IDENTIFICATION OF NATURAL INHIBITORS OF BCR-ABL FOR THE TREATMENT OF CHRONIC MYELOID LEUKEMIA. Chemical Biology
& Drug Design.
201790(4):596-608
62Shamim Akhtar Sufi, Lakshmi Narayana Adigopula, Safiulla Basha Syed, Victor Mukherjee, Mohane S. Coumar, H. Surya Prakash Rao and Rukkumani RajagopalanIN-SILICO AND IN-VITRO ANTI-CANCER POTENTIAL OF A CURCUMIN ANALOGUE (1E, 6E)-1, 7-DI (1H-INDOL-3-YL) HEPTA-1, 6-DIENE-3, 5-DIONEBiomedicine & Pharmacotherapy201785, 389–398
61Vivek Kumar Singh, Hsin-Huei Chang, Ching-Chuan Kuo, Hui-Yi Shiao, Hsing-Pang Hsieh and Mohane Selvaraj Coumar*DRUG REPURPOSING FOR CHRONIC MYELOID LEUKEMIA: IN SILICO AND IN VITRO INVESTIGATION OF DRUGBANK DATABASE FOR ALLOSTERIC BCR-ABL INHIBITORS.J. Biomolecular Structure Dynamics201735 (8), 1833-1848
60Yung Chang Hsu, Mohane Selvaraj Coumar, Wen-Chieh Wang, Hui-Yi Shiao, Yi-Yu Ke, Wen-Hsing Lin, Ching-Chuan Kuo, Chun-Wei Chang, Fu-Ming Kuo, Pei-Yi Chen, Sing-Yi Wang, An-Siou Li, Chun-Hwa Chen, Po-Chu Kuo, Ching-Ping Chen, Ming-Hsine Wu, Chen-Lung Huang, Kuei-Jung Yen, Yun-I Chang, John Tsu-An Hsu, Chiung-Tong Chen, Teng-Kuang Yeh, Jen-Shin Song, Chuan Shih and Hsing-Pang HsiehDISCOVERY OF BPR1K871 - A QUINAZOLINE BASED MULTI-KINASE INHIBITOR FOR THE TREATMENT OF AML AND SOLID TUMORS: RATIONAL DESIGN, SYNTHESIS, IN VITRO AND IN VIVO EVALUATIONOncotarget 20167, 86239-86256
59Sarvagalla, S.; Cheung, C.H.A.; Tsai, J.Y.; Hsieh, H.P.; Coumar, M.S*
DISRUPTION OF PROTEIN-PROTEIN INTERACTIONS: HOT SPOT DETECTION, STRUCTURE-BASED VIRTUAL SCREENING AND IN VITRO TESTING FOR THE ANTI-CANCER DRUG TARGET - SURVIVIN.RSC Advances20166, 31947-31959
58Dinakar R. Ampasala, M. Pritika, Mohane Selvaraj Coumar and Amouda Venkatsan, MINING PLUTELLA XYLOSTELLA EXPRESSED SEQUENCE TAGS (EST) FOR A FUNCTIONALLY ANNOTATED CANDIDATE GENE INDEX. Indian journal of Agricultural Research, 201650 (1), 33-38.
5760. Sailu Sarvagalla, Hsing-Pang Hsieh and Mohane Selvaraj Coumar*THERAPEUTIC POLYMERIC NANOPARTICLES AND METHODS OF MAKING AND USING SAME: A PATENT EVALUATION OF WO2015036792Expert opinion Therapeutic Patents201626 (7), 751-755
56Syed, S. B.; Coumar, M. S.*P-GLYCOPROTEIN MEDIATED MULTIDRUG RESISTANCE REVERSAL BY PHYTOCHEMICALS: A REVIEW OF SAR & FUTURE PERSPECTIVE FOR DRUG DESIGN.Current topics in medicinal chemistry,201616(22), 2484-508.
55Sailu Sarvagalla and Mohane Selvaraj Coumar*PROTEIN-PROTEIN INTERACTIONS (PPIS) AS AN ALTERNATIVE TO TARGETING THE ATP BINDING SITE OF KINASE: IN SILICO APPROACH TO IDENTIFY PPI INHIBITORS inApplied Case Studies and Solutions in Molecular Docking-Based Drug Design, Eds.: Siavoush Dastmalchi, Maryam Hamzeh-Mivehround and Babak Sokouti, IGI Global, 2016pp249-277
54Kumaravel Mohankumar, Subhashree Sridharan, Sankar Pajaniradje, Vivek Kumar Singh, Larance Ronsard, Akhil C. Banerjea, Dinesh Babu Somasundaram, Mohane Selvaraj Coumar, Latha Periyasamy, Rukkumani RajagopalanBDMC-A, AN ANALOG OF CURCUMIN, INHIBITS MARKERS OF INVASION, ANGIOGENESIS, AND METASTASIS IN BREAST CANCER CELLS VIA NF-κb PATHWAY- A COMPARATIVE STUDY WITH CURCUMINBiomedicine & Pharmacotherapy201574, 178-186
53Ke, Y. Y.; Singh, V. K.; Coumar, M. S.; Hsu, Y. C.; Wang, W. C.; Song, J. S.; Chen, C. H.; Lin, W. H.; Wu, S. H.; Hsu, J. T.; Shih, C.; Hsieh, H. P., Homology modeling of DFG-in FMS-like tyrosine kinase 3 (FLT3) and structure-based virtual screening for inhibitor identification, Scientific Reports 20155:11702
52Gopichand Chinta, Mariasoosai Ramya Chandar Charles, Ivana Klopcic, Marija Sollner Dolenc, Latha Periyasamy,* and Mohane Selvaraj Coumar*IN SILICO AND IN VITRO INVESTIGATION OF THE PIPERINE'S MALE CONTRACEPTIVE EFFECT: DOCKING AND MOLECULAR DYNAMICS SIMULATION STUDIES IN ANDROGEN BINDING PROTEIN AND ANDROGEN RECEPTOR, Planta medica201581, 804-812
51Sailu Sarvagalla, Vivek Kumar Singh, Yi-Yu Ke, Hui-Yi Shiao, Wen-Hsing Lin, Hsing-Pang Hsieh, John T. A. Hsu, and Mohane Selvaraj Coumar*IDENTIFICATION OF LIGAND EFFICIENT, FRAGMENT-LIKE HITS FROM AN HTS LIBRARY: STRUCTURE-BASED VIRTUAL SCREENING AND DOCKING INVESTIGATIONS OF 2H- AND 3H-PYRAZOLO TAUTOMERS FOR AURORA KINASE A SELECTIVITYJ. Computuer Aided Molecular Design201529, 89-100
50Gopichand Chinta, Safiulla Basha Syed, Mohane Selvaraj Coumar, Latha PeriyasamyPIPERINE: A COMPREHENSIVE REVIEW OF PRE-CLINICAL AND CLINICAL INVESTIGATIONSCurrent Bioactive Compounds201511(3), 156-169
49Sailu Sarvagalla and Mohane Selvaraj Coumar*STRUCTURAL BIOLOGY INSIGHT FOR THE DESIGN OF SUB-TYPE SELECTIVE AURORA KINASE INHIBITORSCurrent Cancer Drug Targets.201515, 375-393
48R. Vasundhara Devi, S. Siva Sathya, Mohane Selvaraj Coumar*EVOLUTIONARY ALGORITHMS FOR DE NOVO DRUG DESIGN – A SURVEYApplied Soft Computing201527, 543-552
47Kumaravel Mohankumar, Sankar Pajaniradje, Subhashree Sridharan, Vivek Kumar Singh, Larance Ronsard, Akhil C Banerjea, Chellakkan S Benson, Mohane Selvaraj Coumar, Latha Periyasamy, Rajagopalan RukkumaniMOLECULAR MECHANISM OF APOPTOTIC INDUCTION BY AN ANALOG OF CURCUMIN, BDMC-A IN HUMAN LARYNGEAL CARCINOMA CELL LINE (HEP-2) THROUGH EXTRINSIC AND INTRINSIC PATHWAYS IN COMPARISON WITH CURCUMIN: AN IN VITRO - IN SILICO STUDYCellular Oncology201437,439-454
46Yi-Yu Ke, Mohane Selvaraj Coumar, Hui-Yi Shiao, Wen-Chieh Wang, Chieh-Wen Chen, Jen-Shin Song, Chun-Hwa Chen, Wen-Hsing Lin, Szu-Huei Wu, John T. A. Hsu, Chung-Ming Chang and Hsing-Pang HsiehLIGAND EFFICIENCY BASED APPROACH FOR EFFICIENT VIRTUAL SCREENING OF COMPOUND LIBRARIESEuropean J Medicinal Chemistry201483, 226-235
45Hemant Arya and Mohane Selvaraj Coumar*VIRTUAL SCREENING OF TRADITIONAL CHINESE MEDICINE (TCM) DATABASE: IDENTIFICATION OF FRAGMENT-LIKE LEAD MOLECULES FOR FILARIASIS TARGET ASPARAGINYL-TRNA SYNTHETASEJ. Molecular Modeling201420, 2266
44R. Vasundhara Devi, S. Siva Sathya, Mohane Selvaraj Coumar*MULTI-OBJECTIVE GENETIC ALGORITHM FOR DE NOVO DRUG DESIGNInternational J. Soft Computing Engineering20144 (2), 92-96
43Kumaravel Mohankumar, Sankar Pajaniradje, Subhashree Sridharan, Vivek Kumar Singh, Larance Ronsard, Akhil C Banerjea, Chellakkan S Benson, Mohane Selvaraj Coumar, Rukkumani Rajagopalan.MECHANISM OF APOPTOTIC INDUCTION IN HUMAN BREAST CANCER CELL, MCF-7, BY AN ANALOG OF CURCUMIN IN COMPARISON WITH CURCUMIN - AN IN VITRO AND IN SILICO APPROACHChemio-Biological. Interaction2014210, 51-63
42R. Vasundhara Devi, S. Siva Sathya and Mohane Selvaraj Coumar*.GAMOL: GENETIC ALGORITHM BASED DE NOVO MOLECULE GENERATORInt. Conf. on Adv. in Comp., Comm., and Inf. Sci. (ACCIS-14);
TKM College of Engineering, Kollam, Kerala, India, June 26-28th 2014
2014259-265
41Chun Hei Antonio Cheung, Sailu Sarvagalla, Jane Ying-Chieh Lee, Yi-Chun Huang, Mohane Selvaraj Coumar*AURORA KINASE INHIBITOR PATENTS AND AGENTS IN CLINICAL TESTING: AN UPDATE (2011-13)Expert opinion Therapeutic. Patents201424 (9), 1021-1038
40Hui-Yi Shiao, Mohane Selvaraj Coumar, Chun-Wei Chang, Yi-Yu Ke, Ya-Hui Chi, Chang-Ying Chu, Hsu-Yi Sun, Chun-Hwa Chen, Wen-Hsing Lin, Ka-Shu Fung, Po-Chu Kuo, Chin-Ting Huang, Kai-Yen Chang, Cheng-Tai Lu, John T. A. Hsu, Chiung-Tong Chen, Weir-Torn Jiaang, Yu-Sheng Chao, and Hsing-Pang HsiehOPTIMIZATION OF LIGAND AND LIPOPHILIC EFFICIENCY TO IDENTIFY AN IN VIVO ACTIVE FURANO-PYRIMIDINE AURORA KINASE INHIBITORJ. Medicinal Chemistry201356, 5247-5260
39Yi-Hui Peng, Hui-Yi Shiao, Chih-Hsiang Tu, Pang-Min Liu, John Tsu-An Hsu, Prashanth Kumar Amancha, Jian-Sung Wu, Mohane Selvaraj Coumar, Chun-Hwa Chen, Sing-Yi Wang, Wen-Hsing Lin, Hsu-Yi Sun, Yu-Sheng Chao, Ping-Chiang Lyu, Hsing-Pang Hsieh, and suying wuPROTEIN KINASE INHIBITOR DESIGN BY TARGETING THE ASP-PHE-GLY (DFG) MOTIF: THE ROLE OF THE DFG MOTIF IN THE DESIGN OF EPIDERMAL GROWTH FACTOR RECEPTOR INHIBITORSJ. Medicinal Chemistry201356, 3889−3903
38Jiun-Ming Wu, Chiung-Tong Chen, Mohane Selvaraj Coumar, Wen-Hsin Lin, Zi-Jie Chen, John T.-A. Hsu, Yi-Hui Peng, Hui-Yi Shiao, Wen-Hsing Lin, Chang-Ying Chu, Jian-Sung Wu, Chih-Tsung Lin, Ching-Ping Chen, Ching-Cheng Hsueh, Kai-Yen Chang, Li-Pin Kao, Chi-Ying F. Huang, Yu-Sheng Chao, Su-Ying Wu, Hsing-Pang Hsieh, and Ya-Hui ChiAURORA KINASE INHIBITORS REVEAL MECHANISMS OF HURP IN NUCLEATION OF CENTROSOMAL AND KINETOCHORE MICROTUBULESProceedings. National Academia Sciences USA2013110, E1779-E1787
37Yi-Yu Ke, Hui-Yi Shiao, Yung Chang Hsu, Chang-Ying Chu, Wen-Chieh Wang, Yen-Chun Lee, Wen-Hsing Lin, Chun-Hwa Chen, John T. A. Hsu, Chun-Wei Chang, Cheng-Wei Lin, Teng-Kuang Yeh, Yu-Sheng Chao, Mohane Selvaraj Coumar,* and Hsing-Pang Hsieh.*3D-QSAR ASSISTED DRUG DESIGN: IDENTIFICATION OF A POTENT QUINAZOLINE BASED AURORA KINASE INHIBITORChemMedChem20138, 136-148
36Mohane Selvaraj Coumar, Fang-Ying Tsai, Jagat Rakesh Kanwar, Sailu Sarvagalla, Chun Hei Antonio Cheung.TREAT CANCERS BY TARGETING SURVIVIN: JUST A DREAM OR FUTURE REALITY? Cancer Treatment Reviews201339, 802-811
35Jiann-Yih Yeh, Mohane Selvaraj Coumar, Hui-Yi Shiao, Ta-Jen Lin, Yen-Chun Lee, Hui-Chen Hung, Shengkai Ko, Fu-Ming Kuo, Ming-Yu Fang, Yu-Lin Huang, John T. A. Hsu, Teng-Kuang Yeh, Shin-Ru Shih, Yu-Sheng Chao, Jim-Tong Horng, and Hsing-Pang HsiehANTI-INFLUENZA DRUG DISCOVERY: IDENTIFICATION OF ORALLY BIOAVAILABLE QUINOLINE DERIVATIVE THROUGH ACTIVITY AND PROPERTY GUIDED LEAD OPTIMIZATIONChemMedChem20127, 1546-1550
34Chun Hei Antonio Cheung, Wen-Hsing Lin, John Tsu-An Hsu, Tzyh-Chyuan Hour, Teng-Kuang Yeh, Shengkai Ko, Tzu-Wen Lien, Mohane Selvaraj Coumar, Jin-Fen Liu, Wen-Yang Lai, Hui-Yi Shiao, Tian-Ren Lee, Hsing-Pang Hsieh, Jang-Yang ChangBPR1K653, A NOVEL AURORA KINASE INHIBITOR, EXHIBITS POTENT ANTI-PROLIFERATIVE ACTIVITY IN MDR1 (P-GP170)-MEDIATED MULTIDRUG-RESISTANT CANCER CELLSPLoS ONE20116(8): e23485
33Yen-Shih Tung, Mohane Selvaraj Coumar, Yu-Shan Wu, Hui-Yi Shiao, Jang-Yang Chang, Jing-Ping Liou, Paritosh Shukla, Chun-Wei Chang, Chi-Yen Chang, Ching-Chuan Kuo, Teng-Kuang Yeh, Chin-Yu Lin, Jian-Sung Wu, Su-Ying Wu,† Chun-Chen Liao, and Hsing-Pang HsiehSCAFFOLD-HOPPING STRATEGY: SYNTHESIS AND BIOLOGICAL EVALUATION OF 5,6-FUSED BICYCLIC–HETEROAROMATICS TO IDENTIFY ORALLY BIOAVAILABLE ANTICANCER AGENTSJ. Medicinal Chemistry201154, 3076-3080
32Chun Hei Antonio Cheung, Mohane Selvaraj Coumar, Jang-Yang Chang, Hsing-Pang HsiehAURORA KINASE INHIBITOR PATENTS AND AGENTS IN CLINICAL TESTING: AN UPDATE (2009-10)Expert opinion Therapeutic. Patents201121, 857-884
31Yi-Hui Peng, Mohane Selvaraj Coumar, Jiun-Shyang Leou, Jian-Sung Wu, Hui-Yi Shiao, Chia-Hui Lin, Wen-Hsin Lin, Tzu Wen Lien, Xin Chen, John T.-A. Hsu, Yu-Sheng Chao, Ping-Chiang Lyu, Hsing-Pang Hsieh and Su-Ying WuSTRUCTURAL BASIS FOR THE IMPROVED POTENCY OF PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR (PPAR) AGONISTSChemMedChem20105, 1707–1716
30Mohane Selvaraj Coumar, Chang-Ying Chu, Cheng-Wei Lin, Hui-Yi Shiao, Yun-Lung Ho, Randheer Reddy, Santhosh Kumar Chittimalla, Chun-Hwa Chen, Tzu-Wen Lien, Chin-Ting Huang, Wen-Hsing Lin, John T.-A. Hsu, Jiun-Shyang Leou, Yi-Hui Peng, Jian-Sung Wu, Su-Ying Wu, Chun-Chen Liao, Yu-Sheng Chao, and Hsing-Pang HsiehFAST-FORWARDING KINASE DRUG DISCOVERY: AURORA AND EGFR KINASE INHIBITOR LEAD IDENTIFICATIONJ. Medicinal Chemistry201053, 4980-4988
29Jiann-Yih Yeh, Mohane Selvaraj Coumar, Jim-Tong Horng,║ Hui-Yi Hsiao,║ Fu-Ming Kuo, Hui-Ling Lee, In-Chun Chen, Chun-Wei Chang, Sung-Nain Tseng, Shin-Ru Shih, John T.-A. Hsu, Chun-Chen Liao, Yu-Sheng Chao and Hsing-Pang HsiehANTI-INFLUENZA DRUG DISCOVERY: STRUCTURE-ACTIVITY RELATIONSHIP INSIGHT INTO NOVEL ANGELICIN DERIVATIVESJ. Medicinal Chemistry201053, 1519–1533
28Mohane Selvaraj Coumar, Ming-Tsung Tsai, Chang-Ying Chu, Biing-Jiun Uang, Chi-Huang Teng, Chun-Yu Chang, Teng-Yuan Chang, Wen-Hsing Lin, John T.-A. Hsu, Jian-Sung Wu, Su-Ying Wu, Yu-Sheng Chao, and Hsing-Pang HsiehIDENTIFICATION, SAR STUDIES AND X-RAY COCRYSTAL ANALYSIS OF A NOVEL FURANO-PYRIMIDINE AURORA KINASE A INHIBITORChemMedChem20105 (2), 255-267
27Chun Hei Antonio Cheung, Huang-Hui Chen, Ching-Chuan Kuo, Chi-Yen Chang, Mohane S. Coumar, Hsing-Pang Hsieh and Jang-Yang ChangSURVIVIN COUNTERACTS THE THERAPEUTIC EFFECT OF MICROTUBULE DE-STABILIZERS BY STABILIZING TUBULIN POLYMERSMolecular Cancer20098:43
26Yu-Shan Wu, Mohane Selvaraj Coumar, Jang-Yang Chang, Hsu-Yi Sun, Fu-Ming Kuo, Ching-Chuan Kuo, Ying-Jun Chen, Chi-Yen Chang, Chia-Ling Hsiao, Jing-Ping Liou, Ching-Ping Chen, Hsien-Tsung Yao, Yi-Kun Chiang, Uan-Kang Tan, Chiung-Tong Chen, Chang-Ying Chu, Su-Ying Wu, Teng-Kuang Yeh, Chin-Yu Lin and Hsing-Pang HsiehSYNTHESIS AND EVALUATION OF 3-AROYLINDOLES AS ANTICANCER AGENTS: METABOLITE APPROACHJ. Medicinal Chemistry200952 (15), 4941-4945
25Yi-Kun Chiang, Ching-Chuan Kuo, Yu-Shan Wu, Chiung-Tong Chen, Mohane Selvaraj Coumar, Jian-Sung Wu, Hsing-Pang Hsieh, Chi-Yen Chang, Huan-Yi Jseng, Ming-Hsine Wu, Jiun-Shyang Leou, Jen-Shin Song, Jang-Yang Chang, Ping-Chiang Lyu, Yu-Sheng Chao and Su-Ying WuGENERATION OF LIGAND-BASED PHARMACOPHORE MODEL AND VIRTUAL SCREENING FOR IDENTIFICATION OF NOVEL TUBULIN INHIBITORS WITH POTENT ANTICANCER ACTIVITYJ. Medicinal Chemistry200952 (14), 4221-4233
24Chia-Hui-Lin, Yi-Hui Peng, Mohane Selvaraj Coumar, Santhosh Kumar Chittimalla, Chin-Chieh Huang, Tzu-wen Lien, Wen-Hsin Lin, John T.-A. Hsu, Uan-Kang Tan, Jai-Hong Cheng, Xin Chen, Chun-Chen Liao, Ping-Chiang Lyn, Yu-Sheng Chao, Su-Ying Wu, and Hsing-Pang HsiehDESIGN AND STRUCTURAL ANALYSIS OF NOVEL PHARMACOPHORES FOR POTENT AND SELECTIVE PPAR AGONISTSJ. Medicinal Chemistry200952 (8), 2618-2622
23Mohane Selvaraj Coumar, Jiun-Shyang Leou, Paritosh Shukla, Jian-Sung Wu, Ajay Kumar Dixit, Wen-Hsing Lin, Chun-Yu Chang, Tzu-Wen Lien, Uan-Kang Tan, Chun-Hwa Chen, John T.-A. Hsu, Yu-Sheng Chao, Su-Ying Wu and Hsing-Pang HsiehSTRUCTURE-BASED DRUG DESIGN OF NOVEL AURORA KINASE A INHIBITORS: STRUCTURAL BASIS FOR POTENCY AND SPECIFICITYJ. Medicinal Chemistry200952 (4), 1050-1062
22Mohane Selvaraj Coumar, Chun Hei Antonio Cheung, Jang-Yang Chang, Hsing-Pang HsiehADVANCES IN AURORA KINASE INHIBITORS AND THEIR PATENTSExpert opinion Therapeutic. Patents200919 (3), 321-356
21Chun Hei Antonio Cheung, Mohane Selvaraj Coumar, Jang-Yang Chang, Hsing-Pang HsiehAURORA KINASE INHIBITORS IN PRECLINICAL AND CLINICAL TESTINGExpert opinion Investigational Drugs200918(4), 379-398
20Gadarla Randheer Reddy, Ching-Chuan Kuo, Uan-Kang Tan, Mohane Selvaraj Coumar, Chi-Yen Chang, Chiang Yi-Kun, Su-Ying Wu, Jang-Yang Chang, Jing-Ping Liou and Hsing-Pang HsiehSYNTHESIS AND STRUCTURE-ACTIVITY RELATIONSHIPS OF 2-AMINO AND 2-HYDROXY-1-AROYLNAPHTHALENES AS POTENT ANTITUBULIN AGENTSJ. Medicinal Chemistry200851, 8163-8167
19Mohane S. Coumar*, Dharam P. Jindal, Giancarlo Bruni, Paola Massarelli, Randhir Singh, Amit K. Sharma, K. Nandakumar and Subhash L. BodhankarSYNTHESIS, Β-ADRENERGIC RECEPTOR BINDING AND ANTIHYPERTENSIVE POTENTIAL OF VANILLIN-DERIVED PHENOXY PROPANOLAMINESIndian J Chemistry200847B(6), 903-909
18Mohane Selvaraj Coumar, Jian-Sung Wu, Jiun-Shyang Leou, Uan-Kang Tan, Chung-Yu Chang, Teng-Yuan Chang, Wen-Hsing Lin, John T.-A. Hsu, Yu-Sheng Chao, Su-Ying Wu and Hsing-Pang HsiehAURORA KINASE A INHIBITORS: IDENTIFICATION, SAR EXPLORATION AND MOLECULAR MODELING OF 6,7-DIHYDRO-4H-PYRAZOLO[1,5-A]PYRROLO[3,4-D]PYRIMIDINE-5,8-DIONE SCAFFOLDBioorganic Medicinal Chemistry Letters200818, 1623-1327
17Mohane Selvaraj Coumar, Chung-Nien Chang, Chiung-Tong Chen, Xin Chen, Chia-Hui Chien, Ting-Yueh Tsai, Jai-Hong Cheng, Hsin-Yi Wu, Chia-Hung Han, Ssu-Hui Wu, Yu-Wen Huang, Tsu Hsu, Yu-Sheng Chao, Hsing-Pang Hsieh and Weir-Torn Jiaang3-[2-((2S)-2-CYANO-PYRROLIDIN-1-YL)-2-OXO-ETHYLAMINO]-3-METHYL-BUTYRAMIDE ANALOGUES AS SELECTIVE DPP-IV INHIBITORS FOR THE TREATMENT OF TYPE-II DIABETESBioorganic Medicinal Chemistry Letters200717, 1274-1279
16Ting-Yueh Tsai, Mohane S. Coumar, Tsu Hsu, Hsing-Pang Hsieh, Chia-Hui Chien, Chiung-Tong Chen, Chung-Nien Chang, Yu-Kang Lo, Ssu-Hui Wu, Chung-Yu Huang, Yu-Wen Huang, Min-Hsien Wang, Hsin-Yi Wu, Hong-Jen Lee, Xin Chen, Yu-Sheng Chao and Weir-Torn JiaangSUBSTITUTED PYRROLIDINE-2,4-DICARBOXYLIC ACID AMIDES AS POTENT DIPEPTIDYL PEPTIDASE IV INHIBITORSBioorganic Medicinal Chemistry Letters200616, 3268-3272
15Hsu Tsu, Xin Chen, Chiung-Tong Chen, Shiow-Ju Lee, Chung-Nien Chang, Kuo-His Kao, Mohane S. Coumar, Yen-Ting Yeh, Chia-Hui Chien, Hsin-Sheng Wang, Ke-Ta Lin, Ying-Ying Chang, Ssu-Hui Wu, Yuan-Shou Chen, I-Lin Lu, Su-Ying Wu, Ting-Yueh Tsai, Wei-Cheng Chen, Hsing-Pang Hsieh, Yu-Sheng Chao, Weir-Torn Jiaang2-[3-[2-[(2S)-2-CYANO-1-PYRROLIDINYL]-2-OXOETHYLAMINO]-3-METHYL-1-OXOBUTYL]-1,2,3,4-TETRAHYDROISOQUINOLINE: A POTENT, SELECTIVE, AND ORALLY BIOAVAILABLE DIPEPTIDE-DERIVED INHIBITOR OF DIPEPTIDYL PEPTIDASE IVJ. Medicinal Chemistry200649, 373-380
14Nandakumar, K., Singh, R., Sharma, A., Sharma, B., Bodhankar, S.L., Coumar, M.S., Jindal, D.PEFFECT OF TWO NEWLY SYNTHESIZED β BLOCKERS, DPJ 955 AND DPJ 890 ON ECG OF ANAESTHETIZED MICEIndian Drugs200643, 481-485
1332. Dharam Paul Jindal, Babita Singh, Mohane S. Coumar*, Giancarlo Bruni and Paola MassarelliSYNTHESIS OF 4-(1-OXO-ISOINDOLINE) AND 4-(5,6-DIMETHOXY-1-OXO-ISOINDOLINE)-SUBSTITUTED PHENOXYPROPANOLAMINES AND THEIR BETA1-, BETA2-ADRENERGIC RECEPTOR BINDING STUDIESBioorgani Chemistry200533, 310-324
12Dharam Paul Jindal, Babita Singh, Mohane S. Coumar*, Giancarlo Bruni and Paola MassarelliSYNTHESIS OF 4-(PHTHALIMIDE) AND 4-(BENZAMIDE)-SUBSTITUTED PHENOXYPROPANOLAMINES AND THEIR 1, 2-ADRENERGIC RECEPTOR BINDING STUDIESIndian J. Chemistry200544B, 1441-1445
11Nandakumar K, Bansal SK, Singh R, Bodhankar SL, Jindal DP, Coumar MS, Balaraman R, Bhardwaj SHSELECTIVE BETA(1)-ADRENORECEPTOR BLOCKING ACTIVITY OF NEWLY SYNTHESIZED ACYL AMINO-SUBSTITUTED ARYLOXYPROPANOLAMINE DERIVATIVES, DPJ 955 AND DPJ 890, IN RATSJ Pharmacy Pharmacology200557, 515-519
10K. Nandakumar, S.K. Bansal, Randhir Singh, A.J. Mohite, S.L. Bodhankar, D.P. Jindal, Mohane S. Coumar, R. Balaraman, S.H. BhardwajSTUDY OF  ADRENORECEPTOR ANTAGONISTIC ACTIVITY OF DPJ 904 IN RATSPharmacology200574, 1-5
9Nandakumar K, Bansal S, Bhatt LK, Bodhankar SL, Ghole VS, Coumar MS, Jindal DPCARDIOPROTECTIVE EFFECT OF NEWLY SYNTHESIZED ACYL AMINO SUBSTITUTED PROPANOLAMINE DERIVATIVES, DPJ 955 AND DPJ 890 AGAINST ISOPRENALINE INDUCED MYOCARDIAL NECROSISToxicology International,200510 12(2), 61-66
8Nandakumar K, Singh R, Bansal SK, Bodhankar SL, Jindal DP, Coumar MS, Bhardwaj SH ANTIHYERTENSIVE EFFECT OF NEWLY SYNTHETIZED ACYLAMINO PROPRANOLAMINE DERIVATIVES, DPJ 890 AND DPJ 955 IN HYPERTENSIVE RATSIndian J. Pharmcology200436(6), 381-382
7Sunil Bajad, Mohane S. Coumar, Ravi K. Khajuria, Om P. Suri, Kasturi L. Bedi.CHARACTERIZATION AND SYNTHESIS OF A NEW URINARY METABOLITE 5-[3,4-METHELENEDIOXYPHENYL]-2E,4E-PENADIENOIC ACID-N-(3-YL-PROPIONIC ACID)]-AMIDE OF PIPERINE, AN OMNIPRESENT FOOD COMPONENT, BY LC/NMR/MSEuropean. J. Pharmaceutical Sciences200319, 413–421
6Dharam Paul Jindal, Mohane S. Coumar, Nandakumar K, Subhash Laxmanrao Bodhankar, Prasad Gopal Purohit, Kakasaheb Ramoo Mahadik, Giancarlo Bruni, Elga Collavoli and Paola MassarelliSYNTHESIS, -ADRENERGIC BLOCKING ACTIVITY AND -RECEPTOR BINDING AFFINITIES OF 1-SUBSTITUTED-3-(2-ISOPROPYL-5-METHYL-PHENOXY)-PROPAN-2-OL OXALATESIl Farmaco200358(8), 557-562
5Dharam Paul Jindal, Mohane S. Coumar, Babita Singh, Mohammed Muhiyiden M.I., Girish Nilkanth Zambare and Subhash Laxmanrao BodhankarSYNTHESIS AND LOCAL ANAESTHETIC ACTIVITY OF 2-SUBSTITUTED-N-(2-DIETHYLAMINOETHYL)-ACETAMIDESArzneimittel Forschung/Drug Research, 2003 53(1), 34-39
4Dharam Paul Jindal, Babita Singh, Mohane S. Coumar*, Giancarlo Bruni and Paola Massarelli.SYNTHESIS OF 4-(1-OXO-ISOINDOLINE)-, 4-(5,6-DIMETHOXY-1-OXO-ISOINDOLINE)-AND 4-ACETAMIDO-SUBSTITUTED PHENOXY-3-AMINO-PROPANEDERIVATIVES AND THEIR 1-, 2-ADRENERGIC RECEPTOR BINDING STUDIESIndian J. Chemistry 200342B(11), 2808
3Dharam Paul Jindal, Mohane S. Coumar, Giancarlo Bruni and Paola Massarelli., SYNTHESIS AND ?1-, ?2-ADRENERGIC RECEPTOR BINDING STUDIES OF 4-ACYLAMINO SUBSTITUTED PHENOXYPROPANOLAMINE AND 5-ACYLAMINO SUBSTITUTED NAPHTHYLOXY PROPANOLAMINE DERIVATIVES, , Arzneimittel Forschung/Drug Research, 2002Arzneimittel Forschung/Drug Research, 200252(9), 654-663
2G. Vasuki, V. Parthasarathi, K. Ramamurthi, S. Mohane Coumar, and D.P.Jindal, 2-(1H-INDOL-3-YLMETHYLENE)INDANE-1-ONE, , Acta Crystallographica, 2002Acta Crystallographica, 2002E58, o1222–o1223
1G. Vasuki, S. Thamotharan, V. Parthasarathi, K. Ramamurthi, S. Mohane Coumar, and D.P.Jindal,N-(TERT-BUTYL)-N-[2-HYDROXY-3-(2-ISOPRPYL-5-METHYLPHENOXY)PROPYL]AMMONIUM HYDROGEN OXALATEActa Crystallographica, 2002E58, o93-o94
“;

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Sl.NoTitleYear of Publication
29Dinakar R. Ampasala, M. Pritika, Mohane Selvaraj Coumar and Amouda Venkatsan, Mining Plutella Xylostella?S Expressed Sequence Tags (Est) For A Functionally Annotated Candidate Gene Index, Indian Journal of Plant Physiology, Indian J. Agric. Res., 20162016
28Subhalaxmi Mohanty, Amouda Nizam, Monalisha Biswal, Analysis of Intron Databases: A Review, , International Journal of Microbiology & Bioinformatics., 20162016
27Amouda Nizam, Buvaneswari Shanmugham, Self-organizing Multi-mutation Algorithm for Multiple Sequence Alignment, , 15th International Conference on Advanced Computing Technologies (ICACT), September 21st-22nd, 2013, Annamacharya Institute Of Technology & Sciences, Rajampet., 20162016
26Monalisha Biswal, Amouda Nizam, Subhalaxmi Mohanty,, Functional Analysis of Homing endonucleases in Saccharomyces cerevisiae and finding their domain architecture, , International Journal of Microbiology & Bioinformatics, 20162016
25V. Amouda, G. Jeyakodi, C. Manimozhi, Gollapalli Sowjanuya, K. Kayathri, Computational Approach for Protein Structure Prediction,, , Int. J. of Healthcare Informatics Research, South korea, 20162016
24Venkatesan, A.; Kuppusamy, D.; Gopal, J.; Gasva, K, Interface for protein structure prediction using self-organizing genetic algorithm, , International Journal of Applied Engineering Research, 20152015
23Mohammad Imran Shah and V. Amouda, Gene Selection and Classification of Microarray Data using Hybrid Genetic Algorithm, , 3rd National Conference On Innovations In Indian Science, Engineering & Technology, 20132013
22Amouda Nizam, Buvaneswari Shanmugham, Self-Organizing Genetic Algorithm: A Survey Digital Library, , International Journal of Computer Applications, 20132013
21Amouda Nizam, Buvaneswari Shanmugam, Kuppuswami Subburaya , Self-organizing Multi-mutation Algorithm for Multiple Sequence Alignment, , 15th International Conference on Advanced Computing Technologies, 20132013
20V. Amouda, G. Jeyakodi, C. Manimozhi, Gollapalli Sowjanuya, K. Kayathri,, Computational Approach for Protein Structure Prediction, , Presented the paper in Translational Bioinformatics Conference ,Jeju Island, Korea, 20122012
19Subhalaxmi Mohanty, Amouda Nizam, Monalisha Biswal,, IntDb: A Comprehensive Database for Classified Introns of Saccharomyces & Human,, , Journal of Bioinformation, 20122012
18Amouda Nizam, Jeyakodi Ravi, Kuppuswami Subburaya , Cyclic Genetic Algorithm for Multiple Sequence Alignment., , International Journal of Research and Reviews in Electrical and Computer Engineering (IJRRECE), 20112011
17Amouda Nizam, Buvaneswari Shanmugham, Kuppuswami Subburaya, Self-Organizing Genetic Algorithm for Multiple Sequence Alignment, , Global Journal of Computer Science and Technology, 20112011
16Amouda V, Buvaneswari , Kuppuswami, SO-MSA: Self-Organizing Multiple Sequence Alignment tool, , Online Journal of Bioinformatics, 20112011
15V. Amouda, V. Selvaraj, S. Kuppuswami, iMAGA: Intron Multiple Alignment using Genetic Algorithm, , International Journal of Engineering Science and Technology, 20102010
14V. Amouda, V. Selvaraj, S. Kuppuswami, Genetic algorithm for multiple alignments to find the pattern (GMAP), Indian Journal of Plant Physiology, International Journal of Computer Engineering and Computer Applications, 20102010
13Palanivel K, Amouda V, Kuppuswami S, A Personalized E-Learning Using Web Services and Semantic Web, , Int. J. Computer Engineering and Information Technology, 20092009
12K. Palanivel, S. Kusspuswami, V. Amouda, Service Versioning Approaches in Service-Oriented Architecture: A Survey, , Int. J. Programmable Device Circuits and Systems, 20092009
11K. Palanivel, V. Amouda , A Personalized Agent-based E-Learning System Using Web Services and SOA, , Int. J. Software Engineering and Technology 5, 20092009
10Palanivel K, Amouda V, Kusspuswami S, Publisher-subscriber: An agent for notification of versions in OODBs, , IAMA, Int. conference on Intelligent Agent & Mutliagent Systems, 20092009
9Kusspuswami S, Palanivel K, Amouda V , Applying Aspect-Oriented Approach for Instance Adaptation for Object-Oriented Databases, , Int. Conference on Advanced Computing and Communications, IEEE Computer Society, 20082008
8Palanivel,K, Ashok, M.S, Kuppuswami, Amouda V, Mining and Applying Design Patterns to Agent-Based Systems, , Indian International Conference on Artificial Intelligence IICAI, Hyderabad, 20082008
7V. Amouda, Maneesh Jacob, Non-Linear Differential Equation on Glycolysis Pathway in Biological Process J, , Bioinformatics Trends 2, 20072007
6Kuppuswami S. Palanivel K, Ashok M.S, Amouda V, An Aspect-Oriented Approach to Secure Database Applications., , Int. conference on Information Security (ICMPS), ICIS, 20052005
5Palanivel K, Kuppuswami S, Ashok M.S Amouda V, Recognizing Software Architecture and Design Patterns in Agent-Based Systems, , Int. conference on Emerging Adaptive Systems and Technologies (EAST), 20052005
4Swarnalatha M, Jutur P.P, Amouda V, Mathur.P, A.R. Reddy , Prediction of Transcriptional Regulation by Dlx and Msx homeodomain proteins, , Online Journal of Bioinformatics 5, 20042004
3Amouda V, Karuna Sree K, Palanivel K, Application of Reusability in Bio-Informatics Tools, , Conference on Service through I.T. Enabled Systems, CSI, 20052005
2Amouda V, Karuna Sree, K. and Palanivel, K, Bioinformatics tools - A Comparative Study, , Conference on Advanced Computing and Communications -(ADCOM 2003), 20032003
1Palanivel K, Kuppuswami S. Amouda V, Design Patterns for Networked Multimedia Applications, , IEEE Int. Conference on Robotics, Vision, Information and Signal Processing, Malaysia (ROVISP),, 20032003
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