Amutha Ramaswamy

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SL. NoTitleYear of Publication
33Ikrormi Rungsung, Muthukumaran Rajagopalan, Amutha Ramaswamy., Molecular dynamic study of TMPA mediated dissociation of Nur77-LKB1 complex., Computational Biology and Chemistry, Vol 76, Pages 67-782018
32Nivedita Rai, R. Muthukumaran, R. Amutha., Identification of inhibitor against H. pylori HtrA protease using structure-based virtual screening and molecular dynamics simulations approaches, Microbial Pathogenesis., Vol 118, Pages 365-3772018
31Bindu Madhuri Cavuturu, Vishwambar Vishnu Bhandare, Amutha Ramaswamy Neelakantan Arumugam, Molecular dynamics of interaction of Sesamin and related compounds with the cancer marker β-catenin: an in silico study, Journal of Biomoecular Structure and Dynamics,
30Ikrormi Rungsung, Amutha Ramaswamy, Effects of Peutz-Jeghers syndrome (PJS) causing missense mutations L67P, L182P, G242V and R297S on the structural dynamics of LKB1 (Liver kinase B1) protein, Journal of Biomolecular structure and Dynamics, 2018
29Amutha Ramaswamy, Daryna Smyrnova, Mathy Froeyen, Mohitosh Maiti, Piet Herdewijn, Arnout Ceulemans., Molecular Dynamics of Double Stranded Xylo-Nucleic Acid, Journal of Chemical Theory and Computation 13 (10), 5028-50382017
28M Rajagopalan, S Balasubramanian, A Ramaswamy., Structural dynamics of wild type and mutated forms of human L1 endonuclease and insights into its sequence specific nucleic acid binding mechanism: A molecular dynamics study, Journal of Molecular Graphics and Modelling 76, 43-552017
27M Rajagopalan, S Balasubramanian, A Ramaswamy., Insights into the RNA binding mechanism of human L1-ORF1p: a molecular dynamics study, Molecular BioSystems 13 (9), 1728-17432017
26VV Bhandare, A Ramaswamy., The proteinopathy of D169G and K263E mutants at the RNA Recognition Motif (RRM) domain of tar DNA-binding protein (tdp43) causing neurological disorders: A computational study, 1-192017
25M Rajagopalan, S Balasubramanian, I Ioshikhes, A Ramaswamy., Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115, 122, European Biophysics Journal 46 (5), 471-4842017
24Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D Andrake, Amutha Ramaswamy., Journal of Biomolecular Structure and Dynamics., 1-172016
23Ikrormi R.; Amutha R, Insights into the structural dynamics of Liver kinase B1 (LKB1) by the binding of STe20 Related Adaptera (STRADa) and Mouse protein 25a (MO25a) co-activators, Journal of Biomolecular Structure and Dynamics, 35 (5), 1138-11522016
22Sangeetha, B.; Muthukumaran, R.; Amutha, R., structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase, Journal of Computer-Aided Molecular Design,29 (4), 371-3852016
21Vishwambhar V.B.; Amutha R., Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study, Computational Biology and Chemistry, 61, 97-1082016
20Vishwambhar V. B.; Amutha R., Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43, Advances in Bioinformatics,
19Rai, N.; Ramaswamy, A., Temperature dependent dynamics of DegP-trimer: A molecular dynamics study, Computational and Structural Biotechnology Journal, 13, 329-3382015
18Muthukumaran, R.; Sangeetha, B.; Amutha, R., conformational analysis on the wild type and mutated forms of human ORF1p: a molecular dynamics study, Molecular Biosystems,11 (7), 1987-19992015
17Sangeetha, B.; Muthukumaran, R.; Amutha, R., The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain, , European Biophysics, 43 (10-11), 485-4982014
16B Sangeetha, R Muthukumaran, R Amutha., Pharmacophore modelling and electronic feature analysis of hydroxamic acid derivatives, the HIV integrase inhibitors, SAR and QSAR in Environmental Research 24 (9), 753-7712013
15R. Muthukumaran, B. Sangeetha, R. Amutha and P.P. Mathur, Development of Anti-HIV Activity models of Lysine Sulfonamide Analogues: A QSAR Perspective., , Current Computer Aided Drug Design, 8 (1), 70-822012
14S Balasubramanian, M Rajagopalan, A Ramaswamy., Structural dynamics of full-length retroviral integrase: a molecular dynamics analysis, Journal of Biomolecular Structure and Dynamics 29 (6), 1163-11742012
13M Kohitosh,S Vanessa,A Mikhai,L Eveline,R Helmut,F Mathy,R Amutha,C Arnout,M Andreas,H Piet., Solution Structure and Conformational Dynamics of Deoxyxylonucleic Acid (dXNA): An Orthogonal Nucleic Acid Candidate, Chemistry - A European Journal, 18 (3), 869-879 2012
12Ramaswamy, Amutha; Froeyen, Mathy; Herdewijn, Piet; Ceulemans, Arnout , he helical structure of xylose-DNA, , Journal of the American Chemical Society, 132 (2), 587-5952010
11Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone, , BMC Structural Biology, 20072007
10Amutha Ramaswamy, Ivet Bahar and Ilya Ioschikhes. , Structural Dynamics of Nucleosome Core Particle: Comparison with Nucleosomes Containing Histone Variants Proteins:, , Structure,Function and Bioinformatics, 20052005
9Li wang, Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of nucleosome arrays: Influence of variant histone H2A, , Proc. IEEE 5th Symposium on Bioinformatics and Bioengineering (BIBE'05),, 20052005
8Ramakrishnan Parthasarathi, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami. , Bader's and reactivity descriptors analysis on DNA base pairs, , journal of physical chemistry A, 20042004
7Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Role of twist and slide on the solvation of stacked cytosine dimer: an ab initio study, , theoretical chemistry accounts, 20022002
6Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Free energy calculation for DNA bases in various solvents using Flory-Huggins theory, , Chemical Physics Letters, 20012001
5Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair, Interaction of benzidine with DNA: experimental and modelling studies, , Chemical Physics Letters, 20012001
4Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami., Assessment of importance of solvent in the calculation of condensed Fukui function: A self-consistent reaction field calculation study, , Chemical Physics Letters, 19991999
3Shivaramu, Amutha Ramaswamy and Vaithyanathan Ramprasath., Effective atomic numbers and mass attenuation coefficients of some thermoluminescent dosimetric compounds for total photon interaction, , Nuclear Science And Engineering, 19991999
2Venkatesan Subramanian, Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Jagnathan Padmanabhan and Thirumalachari Ramasami., Hardness profile of Interaction of HF with He, Ne and Ar: Density functional and MP2 calculation, , Chemical Physics Letters, 19981998
1Venkatesan Subramanian, Krishnaswamy Chitra, Dakshinamoorthy Sivanesan, Amutha Ramaswamy and Sambasivam Sankar., Ab initio potential energy surface of Ne...CO complex, Chemical Physics Letters, 19981998

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