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Amutha Ramaswamy

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SL. NoTitleYear of Publication
33Ikrormi Rungsung, Muthukumaran Rajagopalan, Amutha Ramaswamy., Molecular dynamic study of TMPA mediated dissociation of Nur77-LKB1 complex., Computational Biology and Chemistry, Vol 76, Pages 67-782018
32Nivedita Rai, R. Muthukumaran, R. Amutha., Identification of inhibitor against H. pylori HtrA protease using structure-based virtual screening and molecular dynamics simulations approaches, Microbial Pathogenesis., Vol 118, Pages 365-3772018
31Bindu Madhuri Cavuturu, Vishwambar Vishnu Bhandare, Amutha Ramaswamy Neelakantan Arumugam, Molecular dynamics of interaction of Sesamin and related compounds with the cancer marker β-catenin: an in silico study, Journal of Biomoecular Structure and Dynamics, doi.org/10.1080/07391102.2018.1442250
2018
30Ikrormi Rungsung, Amutha Ramaswamy, Effects of Peutz-Jeghers syndrome (PJS) causing missense mutations L67P, L182P, G242V and R297S on the structural dynamics of LKB1 (Liver kinase B1) protein, Journal of Biomolecular structure and Dynamics, doi.org/10.1080/07391102.2018.1441070. 2018
29Amutha Ramaswamy, Daryna Smyrnova, Mathy Froeyen, Mohitosh Maiti, Piet Herdewijn, Arnout Ceulemans., Molecular Dynamics of Double Stranded Xylo-Nucleic Acid, Journal of Chemical Theory and Computation 13 (10), 5028-50382017
28M Rajagopalan, S Balasubramanian, A Ramaswamy., Structural dynamics of wild type and mutated forms of human L1 endonuclease and insights into its sequence specific nucleic acid binding mechanism: A molecular dynamics study, Journal of Molecular Graphics and Modelling 76, 43-552017
27M Rajagopalan, S Balasubramanian, A Ramaswamy., Insights into the RNA binding mechanism of human L1-ORF1p: a molecular dynamics study, Molecular BioSystems 13 (9), 1728-17432017
26VV Bhandare, A Ramaswamy., The proteinopathy of D169G and K263E mutants at the RNA Recognition Motif (RRM) domain of tar DNA-binding protein (tdp43) causing neurological disorders: A computational study, 1-192017
25M Rajagopalan, S Balasubramanian, I Ioshikhes, A Ramaswamy., Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115, 122, European Biophysics Journal 46 (5), 471-4842017
24Sangeetha Balasubramanian, Muthukumaran Rajagopalan, Ravi Shankar Bojja, Anna Marie Skalka, Mark D Andrake, Amutha Ramaswamy., Journal of Biomolecular Structure and Dynamics., 1-172016
23Ikrormi R.; Amutha R, Insights into the structural dynamics of Liver kinase B1 (LKB1) by the binding of STe20 Related Adaptera (STRADa) and Mouse protein 25a (MO25a) co-activators, Journal of Biomolecular Structure and Dynamics, 35 (5), 1138-11522016
22Sangeetha, B.; Muthukumaran, R.; Amutha, R., structural dynamics of native and V260E mutant C-terminal domain of HIV-1 integrase, Journal of Computer-Aided Molecular Design,29 (4), 371-3852016
21Vishwambhar V.B.; Amutha R., Identification of Potent siRNA Molecules for TDP43 Mutants causing Amyotrophic lateral Sclerosis: a computational study, Computational Biology and Chemistry, 61, 97-1082016
20Vishwambhar V. B.; Amutha R., Structural dynamics of human Argonaute2 and its interaction with siRNAs designed to target mutant tdp43, Advances in Bioinformatics, doi.org/10.1155/2016/87928142016
19Rai, N.; Ramaswamy, A., Temperature dependent dynamics of DegP-trimer: A molecular dynamics study, Computational and Structural Biotechnology Journal, 13, 329-3382015
18Muthukumaran, R.; Sangeetha, B.; Amutha, R., conformational analysis on the wild type and mutated forms of human ORF1p: a molecular dynamics study, Molecular Biosystems,11 (7), 1987-19992015
17Sangeetha, B.; Muthukumaran, R.; Amutha, R., The dynamics of interconverting D- and E-forms of the HIV-1 integrase N-terminal domain, , European Biophysics, 43 (10-11), 485-4982014
16B Sangeetha, R Muthukumaran, R Amutha., Pharmacophore modelling and electronic feature analysis of hydroxamic acid derivatives, the HIV integrase inhibitors, SAR and QSAR in Environmental Research 24 (9), 753-7712013
15R. Muthukumaran, B. Sangeetha, R. Amutha and P.P. Mathur, Development of Anti-HIV Activity models of Lysine Sulfonamide Analogues: A QSAR Perspective., , Current Computer Aided Drug Design, 8 (1), 70-822012
14S Balasubramanian, M Rajagopalan, A Ramaswamy., Structural dynamics of full-length retroviral integrase: a molecular dynamics analysis, Journal of Biomolecular Structure and Dynamics 29 (6), 1163-11742012
13M Kohitosh,S Vanessa,A Mikhai,L Eveline,R Helmut,F Mathy,R Amutha,C Arnout,M Andreas,H Piet., Solution Structure and Conformational Dynamics of Deoxyxylonucleic Acid (dXNA): An Orthogonal Nucleic Acid Candidate, Chemistry - A European Journal, 18 (3), 869-879 2012
12Ramaswamy, Amutha; Froeyen, Mathy; Herdewijn, Piet; Ceulemans, Arnout , he helical structure of xylose-DNA, , Journal of the American Chemical Society, 132 (2), 587-5952010
11Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone, , BMC Structural Biology, 20072007
10Amutha Ramaswamy, Ivet Bahar and Ilya Ioschikhes. , Structural Dynamics of Nucleosome Core Particle: Comparison with Nucleosomes Containing Histone Variants Proteins:, , Structure,Function and Bioinformatics, 20052005
9Li wang, Amutha Ramaswamy and Ilya Ioschikhes, Global dynamics of nucleosome arrays: Influence of variant histone H2A, , Proc. IEEE 5th Symposium on Bioinformatics and Bioengineering (BIBE'05),, 20052005
8Ramakrishnan Parthasarathi, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami. , Bader's and reactivity descriptors analysis on DNA base pairs, , journal of physical chemistry A, 20042004
7Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Role of twist and slide on the solvation of stacked cytosine dimer: an ab initio study, , theoretical chemistry accounts, 20022002
6Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair., Free energy calculation for DNA bases in various solvents using Flory-Huggins theory, , Chemical Physics Letters, 20012001
5Amutha Ramaswamy, Venkatesan Subramanian and Balachandran Unni Nair, Interaction of benzidine with DNA: experimental and modelling studies, , Chemical Physics Letters, 20012001
4Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Venkatesan Subramanian, Balachandran Unni Nair and Thirumalachari Ramasami., Assessment of importance of solvent in the calculation of condensed Fukui function: A self-consistent reaction field calculation study, , Chemical Physics Letters, 19991999
3Shivaramu, Amutha Ramaswamy and Vaithyanathan Ramprasath., Effective atomic numbers and mass attenuation coefficients of some thermoluminescent dosimetric compounds for total photon interaction, , Nuclear Science And Engineering, 19991999
2Venkatesan Subramanian, Dakshinamoorthy Sivanesan, Amutha Ramaswamy, Jagnathan Padmanabhan and Thirumalachari Ramasami., Hardness profile of Interaction of HF with He, Ne and Ar: Density functional and MP2 calculation, , Chemical Physics Letters, 19981998
1Venkatesan Subramanian, Krishnaswamy Chitra, Dakshinamoorthy Sivanesan, Amutha Ramaswamy and Sambasivam Sankar., Ab initio potential energy surface of Ne...CO complex, Chemical Physics Letters, 19981998

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